Pairwise Orthologs for CALJA12617

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALJA12617 (F7F8S2)

E Callithrix jacchus | protein-tyrosine-phosphatase [PTPRG]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Petromyzon marinus	PETMA00955		S4RNX7
			E	Chiloscyllium punctatum	CHIPU00292		A0A401RUW6
			E	Callorhinchus milii	CALMI18592		A0A4W3H4C4
			E	Lepisosteus oculatus	LEPOC13826		W5MWP0
			E	Latimeria chalumnae	LATCH09936		H3B0U3
			E	Ornithorhynchus anatinus	ORNAN28400		F6W1D7
			E	Tachyglossus aculeatus	TACAU30499		XP_038627772
			E	Procavia capensis	PROCA15927		ENSPCAG00000016263
			E	Loxodonta africana	LOXAF14619		G3TFT8
			E	Echinops telfairi	ECHTE16377		ENSETEG00000013917
			E	Oryctolagus cuniculus	RABIT12964		ENSOCUG00000002809.3
			E	Ochotona princeps	OCHPR15791		ENSOPRG00000001803
			E	Cavia aperea	CAVAP00299		ENSCAPG00000015753.1
			E	Cavia porcellus	CAVPO00440		H0V0A9
			E	Rattus norvegicus	RATNO10348		F1LP13
			E	Chlorocebus sabaeus	CHLSB10484		A0A0D9RHZ7
			E	Macaca fascicularis	MACFA27459		ENSMFAG00000044130.1
			E	Macaca mulatta	MACMU29947		F7EHH7
			E	Mandrillus leucophaeus	MANLE03422		A0A2K5XF54
			E	Papio anubis	PAPAN24228		A0A2I3M4P9
			E	Colobus angolensis palliatus	COLAP04268		A0A2K5IFL1
			E	Gorilla gorilla gorilla	GORGO28335		G3QVF1
			E	Homo sapiens	HUMAN70798		PTPRG_HUMAN
			E	Pan paniscus	PANPA28168		A0A2R9BLW6
			E	Pan troglodytes	PANTR31460		A0A6D2WNJ6

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