Pairwise Orthologs for BRALA14167

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRALA14167 (BL27673)

E Branchiostoma lanceolatum

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Oryzias latipes	ORYLA01455		ENSORLG00000010315
			E	Oryzias melastigma	ORYME21670		A0A3B3C630
			E	Cyprinodon variegatus	CYPVA21214		A0A3Q2CJE3
			E	Gambusia affinis	GAMAF10653		ENSGAFG00000001775.1
			E	Poecilia reticulata	POERE01855		A0A3P9QED4
			E	Xiphophorus maculatus	XIPMA22438		M4AV56
			E	Astatotilapia calliptera	ASTCA26074		A0A3P8R185
			E	Haplochromis burtoni	HAPBU03500		A0A3Q2WB39
			E	Neolamprologus brichardi	NEOBR02119		A0A3Q4HWD3
			E	Oreochromis aureus	OREAU28560		A0A668VBJ8
			E	Oreochromis niloticus	ORENI47641		I3KM93
			E	Ciona intestinalis	CIOIN13155		F6SEF7
			E	Wuchereria bancrofti	WUCBA02451		A0A3P7FI74
			E	Astyanax mexicanus	ASTMX02948		ENSAMXG00000019078
			E	Latimeria chalumnae	LATCH00313		H2ZSF6
			E	Sphenodon punctatus	SPHPU21415		A0A8D0L1E6
			E	Tegillarca granosa	TEGGR23410		KUTeg_009296
			E	Lytechinus variegatus	LYTVA14212		XP_041463896
			E	Lytechinus variegatus	LYTVA14359		XP_041463896
			E	Sceloporus undulatus	SCEUN09946		XP_042307124
			E	Asterias rubens	ASTRU15663		XP_033639347
			E	Acanthaster planci	ACAPL15254		A0A8B7YW54
			E	Patiria miniata	PATMI33192		A0A913Z087

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