Pairwise Orthologs for BRALA12215

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRALA12215 (BL04983)

E Branchiostoma lanceolatum

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Aspergillus carbonarius (strain ITEM 5010)	ASPC506594		A0A1R3RK51
			E	Aspergillus violaceofuscus (strain CBS 115571)	ASPV105319		A0A2V5HE57
			E	Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)	SORMK05910		A0A8S8ZFE9
			E	Chiloscyllium punctatum	CHIPU20016		A0A401RU91
			E	Callorhinchus milii	CALMI48003		A0A4W3H470
			E	Lepisosteus oculatus	LEPOC07716		W5N9N8
			E	Anabas testudineus	ANATE34435		ENSATEG00000003568.1
			E	Seriola dumerili	SERDU21895		A0A3B4TPG1
			E	Echeneis naucrates	ECHNA08897		A0A665V984
			E	Cynoglossus semilaevis	CYNSE18223		A0A3P8WFG7
			E	Scophthalmus maximus	SCOMX15074		ENSSMAG00000003841.1
			E	Dicentrarchus labrax	DICLA34919		XP_051231171
			E	Gasterosteus aculeatus	GASAC02053		G3N6L5
			E	Mola mola	MOLML22847		A0A3Q4BXY6
			E	Takifugu rubripes	TAKRU48753		H2SJ94
			E	Oryzias javanicus	ORYJA46908		ENSOJAG00000005403.1
			E	Oryzias latipes	ORYLA07628		ENSORLG00000010371
			E	Oryzias melastigma	ORYME20530		A0A3B3B944
			E	Nothobranchius furzeri	NOTFU15856		A0A1A7ZWA9
			E	Kryptolebias marmoratus	KRYMA18084		A0A3Q3AED7
			E	Cyprinodon variegatus	CYPVA31597		A0A3Q2DDC3
			E	Poecilia formosa	POEFO14845		A0A087Y1W2
			E	Poecilia reticulata	POERE13040		A0A3P9N4F9
			E	Xiphophorus maculatus	XIPMA06721		M4ABU7
			E	Salarias fasciatus	SALFA21057		A0A672GFC0

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