Pairwise Orthologs for BRAFL01218

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRAFL01218 (A0A9J7M1Y5)

E Branchiostoma floridae | N-acetyllactosaminide beta-1,6-N-acetylglucosaminy [LOC118427322]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Caulobacter vibrioides (strain ATCC 19089 / CB15)	CAUVC02815		WP_010920700
			B	Caulobacter vibrioides (strain NA1000 / CB15N)	CAUVN02928		WP_010920700
			B	Erwinia billingiae (strain Eb661)	ERWBE02206		WP_013202224
			E	Branchiostoma lanceolatum	BRALA13304		BL16613
			E	Petromyzon marinus	PETMA06576		S4RCT0
			E	Chiloscyllium punctatum	CHIPU03391		A0A401S3M9
			E	Lepisosteus oculatus	LEPOC06923		W5NLX0
			E	Echeneis naucrates	ECHNA52165		A0A665WZS3
			E	Scophthalmus maximus	SCOMX24783		ENSSMAG00000010203.1
			E	Oryzias javanicus	ORYJA06136		ENSOJAG00000007303.1
			E	Oryzias latipes	ORYLA02364		ENSORLG00000002049
			E	Oryzias melastigma	ORYME18524		A0A3B3CFI1
			E	Nothobranchius furzeri	NOTFU03566		A0A8C6NR55
			E	Kryptolebias marmoratus	KRYMA20994		A0A3Q3AWN8
			E	Cyprinodon variegatus	CYPVA14132		A0A3Q2CYH1
			E	Gambusia affinis	GAMAF02636		ENSGAFG00000003328.1
			E	Poecilia reticulata	POERE04696		A0A3P9Q027
			E	Xiphophorus maculatus	XIPMA34016		A0A3B5R8S3
			E	Astatotilapia calliptera	ASTCA36215		A0A3P8RAS4
			E	Haplochromis burtoni	HAPBU27665		A0A3Q2WUI8
			E	Neolamprologus brichardi	NEOBR24998		A0A3Q4N3Q3
			E	Oreochromis aureus	OREAU34612		A0A668SCA8
			E	Oreochromis niloticus	ORENI64519		I3KE70
			E	Amphilophus citrinellus	AMPCI24606		A0A3Q0RDT2
			E	Amphiprion percula	AMPPE15379		A0A3P8S3K2

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