Pairwise Orthologs for BOVIN27411

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN27411 (ENSBTAG00000030190.4)

E Bos taurus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO05156		A0A401P430
			E	Chiloscyllium punctatum	CHIPU17799		A0A401RJY0
			E	Callorhinchus milii	CALMI35248		A0A4W3IYN0
			E	Lepisosteus oculatus	LEPOC03002		W5MBY0
			E	Anguilla anguilla	ANGAN49997		XP_035249029
			E	Anabas testudineus	ANATE24495		ENSATEG00000007260.1
			E	Seriola dumerili	SERDU02322		A0A3B4TR29
			E	Echeneis naucrates	ECHNA12436		A0A665UX84
			E	Cynoglossus semilaevis	CYNSE11508		A0A3P8WAX9
			E	Scophthalmus maximus	SCOMX06383		ENSSMAG00000000810.1
			E	Dicentrarchus labrax	DICLA11929		XP_051258610
			E	Gasterosteus aculeatus	GASAC10393		G3N9W9
			E	Sparus aurata	SPAAU27999		A0A671VCD1
			E	Mola mola	MOLML04476		A0A3Q3X3B1
			E	Tetraodon nigroviridis	TETNG08916		H3DKF5
			E	Oryzias javanicus	ORYJA41312		ENSOJAG00000021179.1
			E	Oryzias latipes	ORYLA09362		ENSORLG00000008197
			E	Oryzias melastigma	ORYME32167		A0A3B3CF82
			E	Nothobranchius furzeri	NOTFU33311		A0A1A8UTV4
			E	Cyprinodon variegatus	CYPVA24684		A0A3Q2GEP3
			E	Gambusia affinis	GAMAF22763		ENSGAFG00000011299.1
			E	Poecilia formosa	POEFO24046		A0A087X9V2
			E	Salarias fasciatus	SALFA51892		A0A672J1H2
			E	Astatotilapia calliptera	ASTCA13174		A0A3P8N8K6
			E	Oreochromis aureus	OREAU24922		A0A668UTG6

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