Pairwise Orthologs for BOVIN24675

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN24675 (ENSBTAG00000018130.6)

E Bos taurus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Natronomonas moolapensis (strain DSM 18674 / CECT 7526 / JCM 14361 / 8.8.11)	NATM800940		Nmlp_1968
			E	Thecamonas trahens ATCC 50062	THETB04432		A0A0L0DA27
			E	Metarhizium acridum (strain CQMa 102)	METAQ02538		E9DY40
			E	Pseudallescheria apiosperma	PSEDA03316		A0A084FVS7
			E	Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1)	SPAPN00633		G3AGB2
			E	Kalmanozyma brasiliensis (strain GHG001)	KALBG00395		V5ETL4
			E	Scyliorhinus torazame	SCYTO04056		A0A401NKX4
			E	Lepisosteus oculatus	LEPOC02992		W5MB82
			E	Scophthalmus maximus	SCOMX14814		ENSSMAG00000000028.1
			E	Dicentrarchus labrax	DICLA12361		XP_051259884
			E	Oryzias melastigma	ORYME13812		A0A3B3CX18
			E	Nothobranchius furzeri	NOTFU30266		A0A9D2Y904
			E	Kryptolebias marmoratus	KRYMA15814		A0A3Q3BEQ6
			E	Gambusia affinis	GAMAF05756		ENSGAFG00000011570.1
			E	Xiphophorus maculatus	XIPMA23115		M4A034
			E	Oreochromis niloticus	ORENI22394		I3J8Y1
			E	Esox lucius	ESOLU46964		A0A3P8Y4F4
			E	Salmo salar	SALSA92623		ENSSSAG00000061744.2
			E	Ictalurus punctatus	ICTPU31508		ENSIPUG00000007425.1
			E	Cyprinus carpio carpio	CYPCA44474		A0A9J8BKD9
			E	Sinocyclocheilus grahami	SINGR61840		A0A672MNE9
			E	Latimeria chalumnae	LATCH10946		H3AGA5
			E	Ornithorhynchus anatinus	ORNAN24140		F7E7Z1
			E	Procavia capensis	PROCA10270		ENSPCAG00000016511
			E	Loxodonta africana	LOXAF18742		G3TSK4

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