Pairwise Orthologs for BOVIN18562

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN18562 (C6KYY4)

E Bos taurus | Vascular permeability factor [VEGFA]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma lanceolatum	BRALA22727		BL13334
			E	Petromyzon marinus	PETMA00874		S4RMA5
			E	Eptatretus burgeri	EPTBU22241		A0A8C4N892
			E	Chiloscyllium punctatum	CHIPU18552		A0A401RPC3
			E	Callorhinchus milii	CALMI17253		A0A4W3H0V2
			E	Lepisosteus oculatus	LEPOC00499		W5NGF3
			E	Anguilla anguilla	ANGAN23456		XP_035279296
			E	Scophthalmus maximus	SCOMX17357		A0A8D3CF56
			E	Takifugu rubripes	TAKRU13910		A0A674NUR2
			E	Kryptolebias marmoratus	KRYMA24422		A0A3Q3ASY4
			E	Cyprinodon variegatus	CYPVA19128		A0A3Q2CJ29
			E	Neolamprologus brichardi	NEOBR17146		A0A3Q4N5X8
			E	Amphilophus citrinellus	AMPCI14041		A0A3Q0SM50
			E	Hippocampus comes	HIPCM19814		A0A3Q2Y9L8
			E	Salmo salar	SALSA39624		A0A1S3MAQ8
			E	Salmo trutta	SALTR53705		A0A674BS55
			E	Electrophorus electricus	ELEEL21291		A0A4W4HR68
			E	Latimeria chalumnae	LATCH05247		H3ALC7
			E	Ornithorhynchus anatinus	ORNAN10739		A0A6I8PGN8
			E	Tachyglossus aculeatus	TACAU20455		XP_038616842
			E	Loxodonta africana	LOXAF20924		G3TWE7
			E	Oryctolagus cuniculus	RABIT02472		ENSOCUG00000011610.3
			E	Ochotona princeps	OCHPR08312		ENSOPRG00000007700
			E	Dipodomys ordii	DIPOR13469		ENSDORG00000023174.1
			E	Fukomys damarensis	FUKDA10022		ENSFDAG00000002748.1

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