Pairwise Orthologs for BOVIN11820

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN11820 (ENSBTAG00000008932.6)

E Bos taurus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Anguilla anguilla	ANGAN30506		XP_035287167
			E	Seriola dumerili	SERDU27020		A0A3B4TET5
			E	Scophthalmus maximus	SCOMX19171		ENSSMAG00000016021.1
			E	Tetraodon nigroviridis	TETNG15485		H3BZC3
			E	Oryzias javanicus	ORYJA37857		A0A3S2MMP4
			E	Oryzias melastigma	ORYME27640		A0A3B3C8J2
			E	Nothobranchius furzeri	NOTFU28239		LOC107394401
			E	Kryptolebias marmoratus	KRYMA18456		A0A3Q3B6R8
			E	Cyprinodon variegatus	CYPVA12435		A0A3Q2DI24
			E	Gambusia affinis	GAMAF23221		ENSGAFG00000003434.1
			E	Poecilia formosa	POEFO12394		A0A096LR99
			E	Poecilia reticulata	POERE04134		A0A3P9MUW6
			E	Xiphophorus maculatus	XIPMA06035		A0A3B5QPX9
			E	Astatotilapia calliptera	ASTCA22094		A0A3P8Q558
			E	Haplochromis burtoni	HAPBU17763		A0A3Q3CA84
			E	Oreochromis aureus	OREAU27691		A0A668UTM9
			E	Oreochromis niloticus	ORENI39864		A0A669EKP9
			E	Amphiprion ocellaris	AMPOC17239		A0A3Q1CZH6
			E	Hippocampus comes	HIPCM17738		A0A3Q2ZKY5
			E	Gadus morhua	GADMO34688		A0A8C5B6B6
			E	Ictalurus punctatus	ICTPU03801		ENSIPUG00000009036.1
			E	Sinocyclocheilus grahami	SINGR39486		A0A672PD12
			E	Latimeria chalumnae	LATCH10312		H2ZVC5
			E	Ornithorhynchus anatinus	ORNAN01471		A0A6I8PFQ1
			E	Tachyglossus aculeatus	TACAU11547		XP_038609197

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