Pairwise Orthologs for BOVIN05288

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN05288 (Q7YRQ5)

E Bos taurus | Hepatocyte nuclear factor 4alpha [HNF4A]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL16864		A0A9J7LAA7
			E	Branchiostoma lanceolatum	BRALA19935		BL12447
			E	Eptatretus burgeri	EPTBU11000		A0A8C4WUS0
			E	Scyliorhinus torazame	SCYTO12263		A0A401P8Q9
			E	Chiloscyllium punctatum	CHIPU01009		A0A401RWZ7
			E	Callorhinchus milii	CALMI04930		A0A4W3ILX4
			E	Lepisosteus oculatus	LEPOC06049		W5M1L6
			E	Anabas testudineus	ANATE21333		ENSATEG00000024572.1
			E	Seriola dumerili	SERDU15689		A0A3B4TMN1
			E	Echeneis naucrates	ECHNA00789		A0A665THD4
			E	Cynoglossus semilaevis	CYNSE02172		ENSCSEG00000009708.1
			E	Scophthalmus maximus	SCOMX02999		A0A8D3B9F1
			E	Dicentrarchus labrax	DICLA31251		A0A8P4KNW3
			E	Gasterosteus aculeatus	GASAC11913		G3PC81
			E	Sparus aurata	SPAAU51416		A0A671UZU1
			E	Mola mola	MOLML05364		A0A3Q3WXT5
			E	Tetraodon nigroviridis	TETNG13868		H3D4G9
			E	Oryzias javanicus	ORYJA17631		ENSOJAG00000000335.1
			E	Oryzias latipes	ORYLA16174		ENSORLG00000016380
			E	Oryzias melastigma	ORYME06224		A0A3B3C839
			E	Nothobranchius furzeri	NOTFU23350		A0A9D3BIA0
			E	Kryptolebias marmoratus	KRYMA24371		A0A3Q3APG3
			E	Gambusia affinis	GAMAF29720		ENSGAFG00000011763.1
			E	Poecilia formosa	POEFO17804		A0A087X2W8
			E	Poecilia reticulata	POERE30003		A0A3P9Q8H3

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