Pairwise Orthologs for BRALA22411

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRALA22411 (BL13993)

E Branchiostoma lanceolatum

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL16563		A0A9J7LBI9
			E	Eptatretus burgeri	EPTBU04524		A0A8C4NCK6
			E	Scyliorhinus torazame	SCYTO01483		A0A401PDM3
			E	Chiloscyllium punctatum	CHIPU04134		A0A401S5T6
			E	Callorhinchus milii	CALMI09279		A0A4W3JHY6
			E	Anguilla anguilla	ANGAN52002		XP_035251352
			E	Anabas testudineus	ANATE14474		A0A3Q1HXR0
			E	Seriola dumerili	SERDU06110		A0A3B4UJR7
			E	Echeneis naucrates	ECHNA23881		A0A665U5N7
			E	Cynoglossus semilaevis	CYNSE24273		A0A3P8VDW4
			E	Gasterosteus aculeatus	GASAC17049		G3PM18
			E	Mola mola	MOLML10166		A0A3Q3W8U3
			E	Takifugu rubripes	TAKRU08005		H2RMQ9
			E	Tetraodon nigroviridis	TETNG16245		H3CI56
			E	Oryzias latipes	ORYLA19938		ENSORLG00000018293
			E	Oryzias melastigma	ORYME01799		A0A3B3DYG2
			E	Nothobranchius furzeri	NOTFU31339		LOC107397222
			E	Kryptolebias marmoratus	KRYMA12827		A0A3Q3AL06
			E	Cyprinodon variegatus	CYPVA21639		A0A3Q2DBD3
			E	Gambusia affinis	GAMAF23685		ENSGAFG00000016838.1
			E	Poecilia formosa	POEFO15112		A0A087XYN3
			E	Poecilia reticulata	POERE23531		A0A3P9N266
			E	Xiphophorus maculatus	XIPMA28205		M3ZG17
			E	Salarias fasciatus	SALFA54594		A0A672F2W3
			E	Haplochromis burtoni	HAPBU31147		A0A3Q3CQU6

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