Pairwise Orthologs for ASTMX19185

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ASTMX19185 (ENSAMXG00000004933)

E Astyanax mexicanus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Acanthamoeba castellanii str. Neff	ACACA09885		L8GUX0
			E	Salpingoeca rosetta (strain ATCC 50818 / BSB-021)	SALR509026		F2UL30
			E	Creolimax fragrantissima	CREFR08337		CFRG8337
			E	Eptatretus burgeri	EPTBU22016		A0A8C4QX32
			E	Scyliorhinus torazame	SCYTO15421		A0A401PVZ8
			E	Chiloscyllium punctatum	CHIPU11075		A0A401SQM0
			E	Callorhinchus milii	CALMI29307		A0A4W3GSA9
			E	Lepisosteus oculatus	LEPOC09822		W5M2A8
			E	Anguilla anguilla	ANGAN40072		A0A9D3LW59
			E	Anabas testudineus	ANATE21264		A0A7N6ASS6
			E	Seriola dumerili	SERDU15623		A0A3B4THE7
			E	Echeneis naucrates	ECHNA01604		A0A665UQG8
			E	Cynoglossus semilaevis	CYNSE02274		A0A3P8WKB2
			E	Scophthalmus maximus	SCOMX03068		A0A2U9C294
			E	Dicentrarchus labrax	DICLA31358		A0A8P4G0P0
			E	Gasterosteus aculeatus	GASAC11889		G3PBD7
			E	Sparus aurata	SPAAU50340		A0A671TJ64
			E	Mola mola	MOLML05421		A0A3Q3X3L1
			E	Takifugu rubripes	TAKRU38269		A0A674PBF6
			E	Tetraodon nigroviridis	TETNG13888		H3D4E8
			E	Oryzias javanicus	ORYJA18850		ENSOJAG00000011970.1
			E	Oryzias latipes	ORYLA16130		ENSORLG00000015937
			E	Oryzias melastigma	ORYME06111		A0A3B3CGJ1
			E	Nothobranchius furzeri	NOTFU23272		A0A1A7ZZP4
			E	Kryptolebias marmoratus	KRYMA12525		A0A3Q2ZL76

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