Pairwise Orthologs for ASTMX13395

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ASTMX13395 (ENSAMXG00000004348)

E Astyanax mexicanus

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO10609		A0A401PB14
			E	Anguilla anguilla	ANGAN05798		XP_035259195
			E	Anabas testudineus	ANATE32978		ENSATEG00000000330.1
			E	Seriola dumerili	SERDU04727		A0A3B4V7I0
			E	Echeneis naucrates	ECHNA47028		A0A665WTQ2
			E	Cynoglossus semilaevis	CYNSE27839		A0A3P8WRG6
			E	Scophthalmus maximus	SCOMX12691		ENSSMAG00000002468.1
			E	Dicentrarchus labrax	DICLA25447		E6ZHK3
			E	Gasterosteus aculeatus	GASAC03033		G3ND12
			E	Sparus aurata	SPAAU31761		A0A671Y6X7
			E	Mola mola	MOLML12160		A0A3Q3X7R8
			E	Takifugu rubripes	TAKRU24631		A0A674MVT6
			E	Tetraodon nigroviridis	TETNG14071		H3DQ11
			E	Oryzias javanicus	ORYJA11344		A0A3S2MI93
			E	Oryzias latipes	ORYLA08101		ENSORLG00000009394
			E	Oryzias melastigma	ORYME24566		A0A3B3BZ14
			E	Nothobranchius furzeri	NOTFU19745		XP_015818493
			E	Kryptolebias marmoratus	KRYMA02415		A0A3Q3ARM9
			E	Cyprinodon variegatus	CYPVA13736		A0A3Q2CKR1
			E	Gambusia affinis	GAMAF06437		ENSGAFG00000004305.1
			E	Poecilia formosa	POEFO09775		A0A087XCL1
			E	Poecilia reticulata	POERE14424		A0A3P9MX23
			E	Xiphophorus maculatus	XIPMA00796		M4AK89
			E	Salarias fasciatus	SALFA42602		A0A672J402
			E	Astatotilapia calliptera	ASTCA39574		A0A3P8NP36

Showing 1 to 25 of 25 rows rows per page