Pairwise Orthologs for ARATH37566

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH37566 (F4JYK6)

E Arabidopsis thaliana | RNA-binding (RRM/RBD/RNP motifs) family protein [MNJ7.21]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Esox lucius	ESOLU51790		A0A3P8XYN8
			E	Apis mellifera	APIME11178		GB53801
			E	Aplysia californica	APLCA11701		LOC124152482
			E	Echinococcus multilocularis	ECHMU09495		A0A068YNJ6
			E	Taenia multiceps	TAEMU10509		Tm5G010725
			E	Cryptosporidium muris (strain RN66)	CRYMR03561		B6A9K0
			E	Marsilea vestita	MARVE11112		Mvestita_S17g16327.1
			E	Ginkgo biloba	GINBI15292		evm.TU.chr4.1415
			E	Picea glauca	PICGL17888		PGL00018389
			E	Daucus carota subsp. sativus	DAUCS18628		A0A175YMD2
			E	Coffea canephora	COFCA09322		A0A068U852
			E	Nicotiana tabacum	TOBAC11437		A0A1S4CCP7
			E	Cucumis sativus	CUCSA01613		A0A0A0LTE8
			E	Lotus japonicus	LOTJA00045		XP_057430798
			E	Ricinus communis	RICCO29424		XP_048225900
			E	Manihot esculenta	MANES04022		A0A251K5E6
			E	Arabidopsis lyrata	ARALY28029		Al_scaffold_0008_26
			E	Eutrema salsugineum	EUTSA28676		V4LBZ4
			E	Theobroma cacao	THECC21738		A0A061GGB0
			E	Corchorus capsularis	COCAP02699		A0A1R3I2U8
			E	Citrus clementina	CITCL14904		V4UAW7
			E	Diphasiastrum complanatum	DIPCM50159		O6H91_19G026700
			E	Actinidia chinensis var. chinensis	ACTCC18687		A0A2R6RB38
			E	Actinidia chinensis var. chinensis	ACTCC21738		A0A2R6Q9T6
			E	Actinidia chinensis var. chinensis	ACTCC23259		A0A2R6QLZ2

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