Pairwise Orthologs for ARATH36539

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH36539 (A0A1P8BG86)

E Arabidopsis thaliana | Leucine-rich repeat transmembrane protein kinase f [MEE6.25]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH36538.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Medicago truncatula	MEDTR24347		AES94066
			E	Arabis alpina	ARAAL14270		A0A087GT26
			E	Brassica rapa subsp. pekinensis	BRARP04244		M4EI74
			E	Brassica oleracea var. oleracea	BRAOL33114		A0A0D3CT78
			E	Arabidopsis lyrata	ARALY27537		scaffold_703830.1
			E	Eutrema salsugineum	EUTSA24875		V4LSN6
			E	Brassica napus	BRANA24805		A0A816YQT8
			E	Brassica napus	BRANA74330		A0A078JM18
			E	Ceratopteris richardii	CERRI05613		A0A8T2UXK5
			E	Welwitschia mirabilis	WELMI14208		W.mirabilis.06218
			E	Pinus taeda	PINTA45267		PTA00049228
			E	Taxus chinensis	TAXCH05942		A0AA38LIT4
			E	Oryza brachyantha	ORYBR19460		J3M2S8
			E	Oryza glaberrima	ORYGL18492		I1PR22
			E	Oryza longistaminata	ORYLO29913		KN538681.1_FG073
			E	Oryza nivara	ORYNI23714		A0A0E0H7X0
			E	Oryza punctata	ORYPU20443		A0A0E0KX04
			E	Oryza rufipogon	ORYRU24189		A0A0E0PFY3
			E	Oryza sativa subsp. indica	ORYSI23671		B8ARS6
			E	Brachypodium distachyon	BRADI26548		I1J3J9
			E	Aegilops tauschii	AEGTA16898		EMT24615
			E	Aegilops tauschii subsp. strangulata	AEGTS16438		A0A453DIB9
			E	Triticum urartu	TRIUA27087		TRIUR3_16359
			E	Sorghum bicolor	SORBI32656		C5YAN8
			E	Zea mays	MAIZE21762		A0A1D6DSR4

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