Pairwise Orthologs for ARATH31984

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH31984 (A0A178US13)

E Arabidopsis thaliana | At5g04420 | Galactose oxidase/kelch repeat superfamily protein [T32M21_20]

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)	POLPP12033		D3B556
			E	Cavenderia fasciculata (strain SH3)	CAVFA03478		F4QDA7
			E	Dictyostelium discoideum	DICDI03935		Q552M8
			E	Tieghemostelium lacteum	TIELA05209		A0A151Z394
			E	Leishmania braziliensis	LEIBR04816		A4HDS0
			E	Trypanosoma vivax (strain Y486)	TRYVY00374		G0U7D8
			E	Trypanosoma rangeli	TRYRA06175		A0A422NAB5
			E	Salarias fasciatus	SALFA11927		A0A672J4P7
			E	Rattus norvegicus	RATNO43538		A0A8I5ZJH5
			E	Myotis lucifugus	MYOLU12785		G1PJX3
			E	Haliotis rufescens	HALRU75083		PoB_007508300
			E	Paramecium octaurelia	PAROT23593		A0A8S1VNW2
			E	Polarella glacialis	POLGL26722		A0A813FEN0
			E	Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709)	MICCC06923		C1EHP7
			E	Amborella trichopoda	AMBTC13186		W1PS90
			E	Zostera marina	ZOSMR11451		A0A0K9PGI7
			E	Asparagus officinalis	ASPOF21482		A0A5P1FR51
			E	Oryza brachyantha	ORYBR12925		J3LIJ2
			E	Oryza glaberrima	ORYGL12130		I1P5P2
			E	Oryza longistaminata	ORYLO22072		KN538956.1_FG012
			E	Oryza nivara	ORYNI16140		A0A0E0GF22
			E	Oryza punctata	ORYPU13704		A0A0E0K728
			E	Oryza rufipogon	ORYRU16330		A0A0E0NN11
			E	Oryza sativa subsp. indica	ORYSI15673		A2XB60
			E	Oryza sativa subsp. japonica	ORYSJ14552		Q0DWB1

Showing 1 to 25 of 25 rows rows per page