Pairwise Orthologs for ARATH30165

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH30165 (A0A1P8B4N6)

E Arabidopsis thaliana | Pentatricopeptide repeat (PPR) superfamily protein [GRS1]

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Polarella glacialis	POLGL23016		A0A813ESB9
			E	Zostera marina	ZOSMR18177		A0A0K9NXD0
			E	Asparagus officinalis	ASPOF09231		A0A5P1ERG9
			E	Oryza glaberrima	ORYGL25144		I1QD23
			E	Oryza longistaminata	ORYLO26167		KN538766.1_FG013
			E	Oryza nivara	ORYNI32655		A0A0E0I5H0
			E	Oryza punctata	ORYPU28064		A0A0E0LPK9
			E	Oryza rufipogon	ORYRU33213		A0A0E0QCJ4
			E	Oryza sativa subsp. indica	ORYSI32544		A2YPS5
			E	Oryza sativa subsp. japonica	ORYSJ29795		Q0D3R8
			E	Brachypodium distachyon	BRADI01831		BRADI1G18310
			E	Aegilops tauschii	AEGTA23947		EMT28708
			E	Aegilops tauschii subsp. strangulata	AEGTS09001		A0A453AR05
			E	Eragrostis tef	ERATE24988		augustus_masked-scaf
			E	Sorghum bicolor	SORBI15765		C5X4X6
			E	Zea mays	MAIZE81934		A0A1D6IN83
			E	Setaria italica	SETIT08381		K3ZR04
			E	Setaria viridis	SETVI15606		A0A4U6W246
			E	Musa acuminata subsp. malaccensis	MUSAM06934		A0A804J1D4
			E	Persea americana	PERAE04857		MRB53_004871
			E	Magnolia sinica	MAGSI34733		XP_058074475
			E	Aristolochia fimbriata	ARIFI01539		H6P81_001539
			E	Nelumbo nucifera	NELNU05615		A0A1U7ZNB9
			E	Macadamia integrifolia	MACIN04258		XP_042492478
			E	Macleaya cordata	MACCD02452		A0A200QVB0

Showing 1 to 25 of 25 rows rows per page