Pairwise Orthologs for ARATH29577

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH29577 (TET20_ARATH)

E Arabidopsis thaliana | Tetraspanin-20 [TOM2AH1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH29578.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Physcomitrium patens	PHYPA09605		A0A2K1J912
			E	Ginkgo biloba	GINBI19934		evm.TU.chr6.1567
			E	Brassica rapa subsp. pekinensis	BRARP00840		M4D3K5
			E	Brassica oleracea var. oleracea	BRAOL01001		A0A0D3A3P1
			E	Arabidopsis lyrata	ARALY25188		fgenesh1_pm.C_scaffo
			E	Eutrema salsugineum	EUTSA00400		V4LUP3
			E	Brassica napus	BRANA00786		A0A078HEI7
			E	Brassica napus	BRANA43583		A0A816R203
			E	Chlorella variabilis	CHLVA03826		E1ZD52
			E	Welwitschia mirabilis	WELMI07466		W.mirabilis.03648
			E	Picea sitchensis	PICSI01801		D5AAB0
			E	Taxus chinensis	TAXCH06845		A0AA38LIZ1
			E	Amborella trichopoda	AMBTC15912		U5D2Z5
			E	Oryza brachyantha	ORYBR24631		J3MHW6
			E	Oryza glaberrima	ORYGL30767		I1Q6Y0
			E	Oryza nivara	ORYNI30053		A0A0E0HVZ2
			E	Oryza rufipogon	ORYRU30477		A0A0E0Q2Z7
			E	Oryza sativa subsp. indica	ORYSI29931		B8B2Y0
			E	Oryza sativa subsp. japonica	ORYSJ27360		A0A0P0X1K7
			E	Brachypodium distachyon	BRADI02956		I1GV00
			E	Triticum turgidum subsp. durum	TRITD140990		A0A9R0RXD4
			E	Sorghum bicolor	SORBI03568		A0A921Q783
			E	Setaria viridis	SETVI04152		A0A4U6V9F4
			E	Persea americana	PERAE26389		MRB53_026459
			E	Magnolia sinica	MAGSI15580		XP_058101354

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