Pairwise Orthologs for ARATH22815

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH22815 (C3H43_ARATH)

E Arabidopsis thaliana | Zinc finger CCCH domain-containing protein 43

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Actinidia chinensis var. chinensis	ACTCC07688		A0A2R6QGG8
			E	Ricinus communis	RICCO11111		XP_015581492
			E	Cannabis sativa	CANSA18962		A0A803P8P1
			E	Arabis alpina	ARAAL10460		A0A087GW95
			E	Brassica rapa subsp. pekinensis	BRARP22145		M4DNH2
			E	Brassica oleracea var. oleracea	BRAOL44584		A0A0D3DRD5
			E	Arabidopsis lyrata	ARALY17971		scaffold_501792.1
			E	Eutrema salsugineum	EUTSA26272		V4LT87
			E	Eucalyptus grandis	EUCGR14202		A0A059CYA5
			E	Erythranthe guttata	ERYGU07076		XP_012833864
			E	Erythranthe guttata	ERYGU07366		A0A022RK45
			E	Brassica napus	BRANA20984		A0A078F4T2
			E	Brassica napus	BRANA90804		A0A078HM88
			E	Amborella trichopoda	AMBTC13932		W1PZX5
			E	Oryza brachyantha	ORYBR08576		J3NCM3
			E	Oryza longistaminata	ORYLO05803		KN541665.1_FG003
			E	Persea americana	PERAE16215		MRB53_016256
			E	Annona cherimola	ANNCH30787		Anche102Chr7g0000680
			E	Magnolia sinica	MAGSI08398		XP_058093819
			E	Nelumbo nucifera	NELNU04447		A0A1U7ZK96
			E	Macadamia integrifolia	MACIN03022		XP_042492285
			E	Macleaya cordata	MACCD00209		A0A200RCV1
			E	Beta vulgaris subsp. vulgaris	BETVV13121		A0A0J8B6J5
			E	Coffea canephora	COFCA11406		A0A068V597
			E	Nicotiana attenuata	NICAT18123		A0A1J6JU34

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