Pairwise Orthologs for ARATH21375

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH21375 (LIRP1_ARATH)

E Arabidopsis thaliana | Light-regulated protein 1, chloroplastic [LIR1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Marchantia polymorpha	MARPO11439		A0A2R6X8X9
			E	Marsilea vestita	MARVE06493		Mvestita_S12g15589.1
			E	Amborella trichopoda	AMBTC21868		W1P8M3
			E	Brachypodium distachyon	BRADI08104		I1HC57
			E	Sorghum bicolor	SORBI17382		A0A921RC38
			E	Persea americana	PERAE27306		MRB53_027376
			E	Macadamia integrifolia	MACIN14547		XP_042501151
			E	Macleaya cordata	MACCD21470		A0A200QGM6
			E	Tetracentron sinense	TETSI07520		A0A834ZN00
			E	Beta vulgaris subsp. vulgaris	BETVV22445		BVRB_6g151890
			E	Actinidia chinensis var. chinensis	ACTCC20957		A0A2R6REN2
			E	Helianthus annuus	HELAN19985		A0A251RVN1
			E	Coffea canephora	COFCA23700		A0A068VDQ3
			E	Erythranthe guttata	ERYGU16236		A0A022QT03
			E	Populus trichocarpa	POPTR27065		B9GMS6
			E	Cannabis sativa	CANSA22198		A0A803QKY5
			E	Prunus dulcis	PRUDU25883		A0A5E4G674
			E	Prunus persica	PRUPE23825		M5XTK9
			E	Rosa chinensis	ROSCH37397		A0A2P6R027
			E	Arabis alpina	ARAAL09908		A0A087GUP3
			E	Brassica rapa subsp. pekinensis	BRARP07463		M4EVW2
			E	Arabidopsis lyrata	ARALY16783		fgenesh2_kg.5__439__
			E	Eutrema salsugineum	EUTSA13094		V4KNF0
			E	Gossypium arboreum	GOSAR09648		A0A0B0MSF7
			E	Gossypium hirsutum	GOSHI53505		A0A075D388

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