Pairwise Orthologs for ARATH19612

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH19612 (A0A384LEF2)

E Arabidopsis thaliana | (thale cress) hypothetical protein | Transmembrane protein

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Musa acuminata subsp. malaccensis	MUSAM28768		A0A804JV97
			E	Persea americana	PERAE17201		MRB53_017242
			E	Magnolia sinica	MAGSI02566		XP_058113358
			E	Nelumbo nucifera	NELNU09502		A0A1U7ZME8
			E	Medicago truncatula	MEDTR37118		G7JGZ0
			E	Phaseolus angularis	PHAAN12816		A0A0L9TA51
			E	Lupinus angustifolius	LUPAN04058		A0A1J7HGE2
			E	Ricinus communis	RICCO24563		B9RV61
			E	Populus trichocarpa	POPTR22813		A0A2K2C092
			E	Prunus dulcis	PRUDU23298		A0A5E4FYU9
			E	Prunus persica	PRUPE06525		M5XBA0
			E	Arabis alpina	ARAAL06044		A0A087H9Y1
			E	Brassica rapa subsp. pekinensis	BRARP03328		M4DX89
			E	Arabidopsis lyrata	ARALY10064		scaffold_301847.1
			E	Eutrema salsugineum	EUTSA24105		V4M0N6
			E	Gossypium hirsutum	GOSHI51132		A0A1U8K8X6
			E	Glycine max	SOYBN62498		K7KZD8
			E	Glycine max	SOYBN68687		I1KVE8
			E	Brassica napus	BRANA02759		A0A078G457
			E	Brassica napus	BRANA46130		A0A078GA20
			E	Brassica napus	BRANA68730		A0A078GUE9
			E	Gossypium raimondii	GOSRA60612		A0A0D2UL77
			E	Gossypium raimondii	GOSRA06131		A0A0D2UQX1

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