Pairwise Orthologs for ARATH19194

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH19194 (A0A384L833)

E Arabidopsis thaliana | RING-type E3 ubiquitin transferase [BTL07]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Hypholoma sublateritium (strain FD-334 SS-4)	HYPSF01732		A0A0D2LKT6
			E	Seriola dumerili	SERDU08812		A0A3B4V4B8
			E	Scophthalmus maximus	SCOMX19479		A0A8D2ZLS7
			E	Dicentrarchus labrax	DICLA50222		XP_051247136
			E	Mola mola	MOLML08907		A0A3Q3XE12
			E	Salarias fasciatus	SALFA48145		A0A672FNN7
			E	Oreochromis niloticus	ORENI42118		I3KUL6
			E	Papilio machaon	PAPMA13391		XP_014359237
			E	Triticum turgidum subsp. durum	TRITD158430		A0A9R0U1G3
			E	Triticum urartu	TRIUA14270		M7ZEG7
			E	Musa acuminata subsp. malaccensis	MUSAM16652		A0A804KSR0
			E	Ricinus communis	RICCO30741		XP_002525456
			E	Brassica rapa subsp. pekinensis	BRARP19761		A0A3P5ZER5
			E	Brassica napus	BRANA18276		A0A078I2F7
			E	Arabidopsis lyrata	ARALY09781		fgenesh2_kg.3__1425_
			E	Eutrema salsugineum	EUTSA23738		V4NQ36
			E	Anaeramoeba ignava	ANAIG04507		A0A9Q0LMB5
			E	Capsaspora owczarzaki (strain ATCC 30864)	CAPO300320		CAOG_00320
			E	Spizellomyces punctatus	SPIPN07744		SPPG_08166
			E	Spizellomyces punctatus (strain DAOM BR117)	SPIPD08674		A0A0L0H5W1
			E	Spraguea lophii (strain 42_110)	SPRLO02169		S7XSD1
			E	Trachipleistophora hominis	TRAHO03091		L7JWX9
			E	Absidia glauca	ABSGL09808		A0A163MLN2
			E	Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638)	CONC201275		A0A137PFR4
			E	Eptatretus burgeri	EPTBU02595		A0A8C4RA97

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