Pairwise Orthologs for ARATH18273

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH18273 (A0A1I9LRM3)

E Arabidopsis thaliana | Auxin-induced in root cultures-like protein [AIR12]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH18272.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Picea sitchensis	PICSI18571		PSI00018568
			E	Pinus taeda	PINTA19549		PTA00038839
			E	Oryza brachyantha	ORYBR30120		J3MYW3
			E	Oryza glaberrima	ORYGL28378		I1QQ63
			E	Oryza nivara	ORYNI35287		A0A0E0IES4
			E	Aristolochia fimbriata	ARIFI13610		H6P81_013610
			E	Macadamia integrifolia	MACIN18980		XP_042509166
			E	Beta vulgaris subsp. vulgaris	BETVV12738		A0A0J8B6Y3
			E	Chenopodium quinoa	CHEQI23744		A0A803KQ85
			E	Daucus carota subsp. sativus	DAUCS32065		A0A166JFA9
			E	Cynara cardunculus var. scolymus	CYNCS13798		A0A103Y769
			E	Coffea canephora	COFCA21624		A0A068U8K5
			E	Nicotiana attenuata	NICAT12373		A0A1J6IH06
			E	Solanum lycopersicum	SOLLC32363		A0A3Q7I3M8
			E	Cucumis sativus	CUCSA22843		A0A0A0K5A4
			E	Medicago truncatula	MEDTR05416		G7LEE2
			E	Cajanus cajan	CAJCA13309		A0A151SQF6
			E	Glycine max	SOYBN48368		C5HU39
			E	Phaseolus angularis	PHAAN19633		A0A0L9VTN6
			E	Lupinus angustifolius	LUPAN07701		A0A1J7HFB3
			E	Cannabis sativa	CANSA35262		A0A803PFU5
			E	Rosa chinensis	ROSCH14621		A0A2P6PTZ7
			E	Arabis alpina	ARAAL05308		A0A087H7U5
			E	Arabidopsis lyrata	ARALY09164		fgenesh2_kg.3__760__
			E	Eutrema salsugineum	EUTSA22887		V4LFM1

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