Pairwise Orthologs for ARATH15820

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH15820 (A0A654F1R5)

E Arabidopsis thaliana | (thale cress) hypothetical protein | Nucleolar histone methyltransferase-related protei

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH15821.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Guillardia theta	GUITH16169		EKX46588
			E	Guillardia theta (strain CCMP2712)	GUITC08769		L1JDH0
			E	Chiloscyllium punctatum	CHIPU29484		A0A401TS52
			E	Bombus impatiens	BOMIM07739		BIMP24806
			E	Symbiodinium microadriaticum	SYMMI17416		A0A1Q9DT03
			E	Musa acuminata subsp. malaccensis	MUSAM19706		A0A804JP47
			E	Brassica rapa subsp. pekinensis	BRARP10335	1:1	M4C7I3
			E	Brassica oleracea var. oleracea	BRAOL13391	1:n	A0A0D3B5Y9
			E	Arabidopsis lyrata	ARALY15272	1:1	scaffold_402770.1
			E	Eutrema salsugineum	EUTSA19258	1:1	V4P0C1
			E	Theobroma cacao	THECC04368		A0A061FL85
			E	Citrus clementina	CITCL22049		V4SMD2
			E	Brassica napus	BRANA08939	1:n	A0A078F2N4
			E	Brassica napus	BRANA58877	1:n	A0A078J8X6
			E	Brassica napus	BRANA60007	1:n	A0A078G501
			E	Brassica oleracea var. oleracea	BRAOL07670	1:n	A0A0D3AP72
			E	Brassica oleracea var. oleracea	BRAOL20071	1:n	A0A0D3BQD8

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