Pairwise Orthologs for ARATH15569

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH15569 (A0A1P8B2R9)

E Arabidopsis thaliana | Mitochondrial ATP synthase D chain-related protein

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH15567.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)	METKA00770		A0A832T9K4
			B	Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437)	STAC703697		WP_015195006
			B	Nitrosococcus halophilus (strain Nc4)	NITHN01886		WP_013033012
			E	Thecamonas trahens ATCC 50062	THETB03664		A0A0L0D502
			E	Naegleria fowleri	NAEFO11734		A0A6A5BDF8
			E	Schizosaccharomyces octosporus (strain yFS286)	SCHOY00963		S9Q3W8
			E	Pyronema omphalodes (strain CBS 100304)	PYROM07601		U4LP12
			E	Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542)	CYBJN01404		A0A1E4S7T8
			E	Rhizophagus irregularis (strain DAOM 197198w)	RHIIW03057		A0A015JQR7
			E	Kryptolebias marmoratus	KRYMA02983		A0A3Q3A8L1
			E	Poecilia formosa	POEFO01116		A0A087YKZ9
			E	Xiphophorus maculatus	XIPMA14610		A0A3B5QU06
			E	Astatotilapia calliptera	ASTCA19594		A0A3P8NR96
			E	Haplochromis burtoni	HAPBU02657		A0A3Q2WU65
			E	Esox lucius	ESOLU67774		A0A3P8XSP5
			E	Sinocyclocheilus grahami	SINGR37237		A0A672TCW5
			E	Echinops telfairi	ECHTE14698		ENSETEG00000016369
			E	Propithecus coquereli	PROCO09078		A0A2K6EEE3
			E	Melopsittacus undulatus	MELUD06452		ENSMUNG00000004993.1
			E	Megaselia scalaris	MEGSC10210		T1GVK3

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