Pairwise Orthologs for ARATH12706

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH12706 (PP166_ARATH)

E Arabidopsis thaliana | Pentatricopeptide repeat-containing protein At2g20

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Oryza punctata	ORYPU05802		A0A0E0M9D3
			E	Musa acuminata subsp. malaccensis	MUSAM07829		A0A804J7M4
			E	Nelumbo nucifera	NELNU33462		A0A1U7YXX3
			E	Macleaya cordata	MACCD16813		A0A200QWW0
			E	Tetracentron sinense	TETSI01841		A0A834ZYV0
			E	Kalanchoe fedtschenkoi	KALFE15801		A0A7N1A1I5
			E	Daucus carota subsp. sativus	DAUCS10517		A0A165Z5F9
			E	Nicotiana attenuata	NICAT07152		A0A1J6IKT5
			E	Capsicum annuum	CAPAN15081		A0A2G2Z3M4
			E	Solanum tuberosum	SOLTU34825		M1BKE0
			E	Phaseolus vulgaris	PHAVU17660		V7BXS7
			E	Lupinus angustifolius	LUPAN04508		A0A1J7GFL9
			E	Quercus lobata	QUELO05313		A0A7N2MDZ5
			E	Ricinus communis	RICCO20177		B9RW07
			E	Manihot esculenta	MANES04960		A0A2C9UWP8
			E	Cannabis sativa	CANSA25409		A0A803Q6M9
			E	Rosa chinensis	ROSCH13989		A0A2P6PS87
			E	Arabis alpina	ARAAL07554		A0A087HE91
			E	Brassica rapa subsp. pekinensis	BRARP32235		M4F6G3
			E	Brassica oleracea var. oleracea	BRAOL48818		A0A0D3E3N4
			E	Arabidopsis lyrata	ARALY12549		fgenesh2_kg.3__3607_
			E	Eutrema salsugineum	EUTSA21869		V4NUL5
			E	Gossypium arboreum	GOSAR16716		LOC108478060
			E	Gossypium hirsutum	GOSHI57556		A0A1U8N9V1
			E	Gossypium raimondii	GOSRA55253		A0A0D2RFW8

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