Pairwise Orthologs for ARATH12429

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH12429 (ADO2_ARATH)

E Arabidopsis thaliana | Adagio protein 2 [ADO2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Tieghemostelium lacteum	TIELA08998		A0A151Z4V2
			E	Ostreococcus lucimarinus (strain CCE9901)	OSTLU02875		OSTLU_2784
			E	Arabis alpina	ARAAL07383		A0A087HDS0
			E	Arabidopsis lyrata	ARALY12471		fgenesh1_pg.C_scaffo
			E	Eutrema salsugineum	EUTSA21109		V4NUV1
			E	Brassica rapa subsp. pekinensis	BRARP24608		M4FCL2
			E	Brassica rapa subsp. pekinensis	BRARP24609		A0A075E6G9
			E	Brassica napus	BRANA05190		A0A078IE73
			E	Brassica napus	BRANA23455		A0A078HMM6
			E	Brassica napus	BRANA23456		A0A078HQT2
			E	Brassica napus	BRANA74753		A0A816LYE1
			E	Brassica oleracea var. oleracea	BRAOL36426		A0A0D3D2T7
			E	Brassica oleracea var. oleracea	BRAOL56018		A0A0D2ZUJ4
			E	Dictyostelium discoideum	DICDI00732		Q55F00
			E	Dictyostelium purpureum	DICPU10209		F1A0D1
			E	Klebsormidium flaccidum	KLEFL11006		KFL_000590220
			E	Klebsormidium nitens	KLENI13023		A0A1Y1HU11

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