Pairwise Orthologs for ARATH10434

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH10434 (MCA7_ARATH)

E Arabidopsis thaliana | Metacaspase-7 [AMC7]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Marchantia polymorpha	MARPO13215		A0A2R6X5B3
			E	Ceratopteris richardii	CERRI07749		A0A8T2UQB9
			E	Oryza rufipogon	ORYRU26594		A0A0E0PPF7
			E	Hordeum vulgare subsp. vulgare	HORVV16329		HORVU1Hr1G067230
			E	Eragrostis tef	ERATE18346		snap_masked-scaffold
			E	Setaria viridis	SETVI40220		A0A4U6VCX4
			E	Nelumbo nucifera	NELNU04117		A0A1U7ZJ94
			E	Cajanus cajan	CAJCA37280		A0A151QX90
			E	Phaseolus vulgaris	PHAVU17003		V7BVU3
			E	Phaseolus angularis	PHAAN26894		A0A0L9UJM6
			E	Rosa chinensis	ROSCH27914		A0A2P6Q7Z8
			E	Arabis alpina	ARAAL04526		A0A087HJN4
			E	Brassica rapa subsp. pekinensis	BRARP26304		M4CHD0
			E	Brassica oleracea var. oleracea	BRAOL34016		A0A0D3CVU1
			E	Arabidopsis lyrata	ARALY08212		Al_scaffold_0002_264
			E	Miscanthus sinensis	MISSI70181		Misin16G186900.v7.1
			E	Miscanthus sinensis	MISSI70182		Misin16G187000.v7.1
			E	Miscanthus sinensis	MISSI73625		Misin17G187300.v7.1
			E	Setaria italica	SETIT10511		K3ZD96
			E	Setaria italica	SETIT10512		K3Z6L3
			E	Brassica napus	BRANA25292		BnaA07g20380D
			E	Brassica napus	BRANA72135		BnaC06g19910D
			E	Monosiga brevicollis	MONBE05680		A9VC84
			E	Symbiodinium microadriaticum	SYMMI09094		A0A1Q9EH19
			E	Klebsormidium flaccidum	KLEFL09551		KFL_001000020

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