Pairwise Orthologs for ARATH07355

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH07355 (A0A1P8APP8)

E Arabidopsis thaliana | CW7 [CW7]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform ARATH07357.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Acanthamoeba castellanii str. Neff	ACACA00613		L8HM54
			E	Spizellomyces punctatus	SPIPN06640		SPPG_07015
			E	Spizellomyces punctatus (strain DAOM BR117)	SPIPD07569		A0A0L0H7M5
			E	Rhizophagus irregularis (strain DAOM 197198w)	RHIIW21859		A0A015J4V8
			E	Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638)	CONC203588		A0A137P940
			E	Branchiostoma floridae	BRAFL10678		A0A9J7KZT3
			E	Loxodonta africana	LOXAF03227		G3TA22
			E	Oryctolagus cuniculus	RABIT17737		ENSOCUG00000001886.2
			E	Fukomys damarensis	FUKDA08236		ENSFDAG00000000723.1
			E	Heterocephalus glaber	HETGA18938		ENSHGLG00100008631.1
			E	Chinchilla lanigera	CHILA04648		A0A8C2W6Q8
			E	Octodon degus	OCTDE21212		ENSODEG00000015023.1
			E	Jaculus jaculus	JACJA01553		A0A8C5L1K1
			E	Cricetulus griseus	CRIGR23112		ENSCGRG00000004501.1
			E	Ictidomys tridecemlineatus	ICTTR13322		ENSSTOG00000028637
			E	Cercocebus atys	CERAT33597		A0A2K5LNI0
			E	Chlorocebus sabaeus	CHLSB07410		A0A0D9QZ76
			E	Macaca fascicularis	MACFA00128		ENSMFAG00000041430.1
			E	Macaca nemestrina	MACNE27069		A0A2K6DCM7
			E	Mandrillus leucophaeus	MANLE11100		A0A2K6ADZ3
			E	Colobus angolensis palliatus	COLAP28640		A0A2K5HQU0
			E	Rhinopithecus bieti	RHIBE03749		A0A2K6KXV7
			E	Rhinopithecus roxellana	RHIRO01732		A0A2K6QYI4
			E	Gorilla gorilla gorilla	GORGO24313		G3RNP7
			E	Homo sapiens	HUMAN61024		K0930_HUMAN

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