Pairwise Orthologs for ARATH04555

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH04555 (Q9C8S1)

E Arabidopsis thaliana | Uncharacterized protein T1P2.9

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Klebsormidium flaccidum	KLEFL12673		KFL_000220180
			E	Klebsormidium nitens	KLENI14685		A0A1Y1HQZ2
			E	Oryza sativa subsp. indica	ORYSI03636		B8A9R9
			E	Triticum urartu	TRIUA09675		M7YKF5
			E	Miscanthus sinensis	MISSI27736		Misin05G263200.v7.1
			E	Brassica rapa subsp. pekinensis	BRARP34038		M4EU67
			E	Brassica oleracea var. oleracea	BRAOL28429		A0A0D3CEM6
			E	Arabidopsis lyrata	ARALY03098		Al_scaffold_0001_306
			E	Eutrema salsugineum	EUTSA10068		V4L295
			E	Brassica napus	BRANA32699		A0A078GM78
			E	Brassica napus	BRANA67300		BnaC05g22920D
			E	Ginkgo biloba	GINBI23725		evm.TU.chr8.838
			E	Picea glauca	PICGL07859		PGL00008048
			E	Picea sitchensis	PICSI18380		A9NVG9
			E	Pinus taeda	PINTA06260		PTA00055201
			E	Taxus chinensis	TAXCH24012		A0AA38G2F0
			E	Amborella trichopoda	AMBTC03512		W1PGB7
			E	Zostera marina	ZOSMR22950		A0A0K9NLH4
			E	Asparagus officinalis	ASPOF14789		A0A5P1ESG1
			E	Oryza brachyantha	ORYBR02967		J3L477
			E	Oryza glaberrima	ORYGL02464		I1NRR2
			E	Oryza longistaminata	ORYLO22414		KN538935.1_FG017
			E	Oryza nivara	ORYNI03667		A0A0E0FTB9
			E	Oryza punctata	ORYPU03021		A0A0E0JNV6
			E	Brachypodium distachyon	BRADI12460		I1HRQ4

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