Pairwise Orthologs for ARALY17950

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARALY17950 (Al_scaffold_0005_163)

E Arabidopsis lyrata

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Caldiarchaeum subterraneum	CALS001479		BAJ51348
			B	candidate division WS2 bacterium BS5B28	UC01201600		acuC
			B	Azospirillum lipoferum (strain 4B)	AZOL401225		WP_014247686
			E	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	TRYB200150		Q38C74
			E	Glarea lozoyensis (strain ATCC 20868 / MF5171)	GLAL204940		S3CSH3
			E	Scytalidium lignicola	SCYLI07751		A0A3E2H5B8
			E	Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1)	SPAPN04055		G3ARJ1
			E	Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7)	TETBL03434		I2H2W7
			E	Zygosaccharomyces rouxii	ZYGRO04851		A0A1Q3A6N5
			E	Gloeophyllum trabeum	GLOTR10784		estExt_fgenesh1_pg.C
			E	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	GLOTA10731		S7R8E6
			E	Armillaria ostoyae	ARMOS07653		A0A284R6V1
			E	Schizophyllum commune	SCHCO06867		gw1.10.327.1
			E	Schizophyllum commune (strain H4-8 / FGSC 9210)	SCHCM11009		D8QG88
			E	Laccaria bicolor	LACBI00818		gwh1.11.190.1
			E	Puccinia graminis	PUCGR15644		PGTT_15775
			E	Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL)	PUCGT09702		PGTG_15775
			E	Piromyces sp. (strain E2)	PIRSE14488		A0A1Y3MMI4
			E	Mola mola	MOLML11158		A0A3Q3WV36
			E	Cavia aperea	CAVAP02697		ENSCAPG00000011851.1
			E	Carlito syrichta	CARSF30195		ENSTSYG00000026350.1
			E	Tupaia belangeri	TUPBE12328		ENSTBEG00000007520
			E	Erinaceus europaeus	ERIEU14041		ENSEEUG00000005715
			E	Caenorhabditis japonica	CAEJA05759		WBGene00125133
			E	Centruroides sculpturatus	CENSC06949		XP_023218451

Showing 1 to 25 of 25 rows rows per page