Pairwise Orthologs for ARAAL05906

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARAAL05906 (A0A087H9J3)

E Arabis alpina | Uncharacterized protein

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Nelumbo nucifera	NELNU26430		A0A1U8AZK3
			E	Tetracentron sinense	TETSI21574		A0A834YT31
			E	Coffea canephora	COFCA10426		A0A068TN92
			E	Manihot esculenta	MANES09894		A0A2C9UXG9
			E	Arabidopsis lyrata	ARALY09898		fgenesh2_kg.3__1546_
			E	Arabidopsis thaliana	ARATH19362		A0A384KCN9
			E	Eutrema salsugineum	EUTSA23001		V4LXJ8
			E	Gossypium arboreum	GOSAR32639		XP_017610101
			E	Gossypium raimondii	GOSRA42253		A0A0D2SUD4
			E	Actinidia chinensis var. chinensis	ACTCC12601		A0A2R6PV93
			E	Actinidia chinensis var. chinensis	ACTCC30038		A0A2R6R0I1
			E	Brassica rapa subsp. pekinensis	BRARP03432		M4DYF0
			E	Brassica rapa subsp. pekinensis	BRARP19676		A0A397ZK58
			E	Brassica napus	BRANA46256		A0A078H5T2
			E	Brassica napus	BRANA18208		A0A816THZ1
			E	Brassica napus	BRANA68903		A0A816L187
			E	Brassica napus	BRANA03558		A0A078J737
			E	Brassica oleracea var. oleracea	BRAOL04456		A0A0D3ADQ9
			E	Brassica oleracea var. oleracea	BRAOL30378		A0A0D3CKA5
			E	Gossypium hirsutum	GOSHI48704		A0A1U8I8N5
			E	Gossypium hirsutum	GOSHI17545		A0A1U8HW38

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