Pairwise Orthologs for DANRE07744

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE07744 (A8KBT9)

E Danio rerio | Caudal type homeo box transcription factor 4 [cdx4]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO08029		A0A401P3U4
			E	Callorhinchus milii	CALMI02009		A0A4W3JGT1
			E	Lepisosteus oculatus	LEPOC16096		W5NDM2
			E	Anguilla anguilla	ANGAN13596		A0A9D3MR99
			E	Anabas testudineus	ANATE25451		A0A3Q1JZW5
			E	Seriola dumerili	SERDU07955		A0A3B4V485
			E	Echeneis naucrates	ECHNA30050		A0A665XCT4
			E	Cynoglossus semilaevis	CYNSE09381		A0A3P8V553
			E	Scophthalmus maximus	SCOMX05394		ENSSMAG00000016233.1
			E	Dicentrarchus labrax	DICLA26588		A0A8C4HRW2
			E	Gasterosteus aculeatus	GASAC20713		G3PYB5
			E	Sparus aurata	SPAAU63427		A0A671ULP3
			E	Mola mola	MOLML19087		A0A3Q3VUQ7
			E	Takifugu rubripes	TAKRU10507		H2TVT8
			E	Tetraodon nigroviridis	TETNG00036		H3D9P6
			E	Oryzias javanicus	ORYJA33135		ENSOJAG00000001616.1
			E	Oryzias latipes	ORYLA01029		A0A3P9LEX1
			E	Oryzias melastigma	ORYME22333		A0A3B3DPW1
			E	Nothobranchius furzeri	NOTFU00778		A0A8C6KG38
			E	Kryptolebias marmoratus	KRYMA04926		A0A3Q2ZLW3
			E	Cyprinodon variegatus	CYPVA16839		A0A3Q2EBT5
			E	Gambusia affinis	GAMAF10505		A0A315VHP9
			E	Poecilia formosa	POEFO07784		A0A087XVM8
			E	Poecilia reticulata	POERE02204		A0A3P9NV69
			E	Xiphophorus maculatus	XIPMA21550		M4AFH7

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