Sequences for TAEGU05588

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene TAEGU05588 (B5G3H8)

E Taeniopygia guttata | Small nuclear ribonucleoprotein Sm D3 [SNRPD3]

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Orthologs 866

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 133
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	TAEGU05588 reference isoform	126			3	B5G3H8

Protein Sequence

Download: Fasta

MSIGVPIKVL HEAEGHIVTC ETNTGEVYRG KLIEAEDNMN CQMSNITVTY RDGRVAQLEQ    60
VYIRGSKIRF LILPDMLKNA PMLKSMKNKN QGSGAGRGKA AILKAQVAAR GRGRGMGRGN   120
IFQKRR                                                              126

cDNA Sequence

Download: Fasta

ATGTCGATTG GAGTGCCAAT CAAGGTCCTG CACGAGGCCG AGGGCCACAT CGTGACCTGT    60
GAGACCAATA CAGGAGAAGT TTATCGAGGC AAACTTATCG AAGCTGAAGA CAACATGAAT   120
TGTCAGATGT CCAACATAAC AGTGACGTAC AGAGATGGAC GGGTGGCACA GCTTGAGCAG   180
GTGTACATCA GGGGCAGCAA GATACGGTTT CTCATCTTAC CAGATATGTT GAAGAATGCT   240
CCTATGCTAA AGAGCATGAA GAATAAAAAC CAGGGTTCTG GAGCTGGGCG AGGGAAAGCA   300
GCTATTCTCA AAGCTCAAGT GGCTGCAAGA GGAAGAGGCC GTGGTATGGG CCGTGGCAAC   360
ATCTTCCAGA AGCGAAGATA A                                             381