Sequences for STRA101394

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene STRA101394 (R4Z960)

B Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) | Diacylglycerol kinase [dgkA]

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Orthologs 813

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 547
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	STRA101394 reference isoform	132			1	R4Z960

Protein Sequence

Download: Fasta

MDLNDNNQKK WKNRTLTSSM EFAVTGIFTA FKEERNMRKH LVSAILVILA GLTFQVSMVE    60
WLFLLLSIFL VITFEIINSA IENVVDLASN YHFSMLAKNA KDMAAGAVLV VSLFAVLVGL   120
IIFIPKILAL LL                                                       132

cDNA Sequence

Download: Fasta

ATGGACTTAA ACGACAATAA TCAAAAAAAA TGGAAAAATC GCACCTTAAC ATCAAGCATG    60
GAATTTGCTG TTACAGGGAT TTTTACAGCT TTTAAAGAAG AAAGAAATAT GCGTAAGCAT   120
TTGGTTTCTG CCATTTTAGT AATACTTGCT GGTCTTACTT TCCAAGTATC TATGGTGGAG   180
TGGTTATTTC TTTTATTGAG TATTTTTTTG GTAATTACTT TTGAAATTAT CAATTCAGCT   240
ATTGAAAATG TAGTTGATTT GGCAAGTAAT TACCATTTCT CGATGCTGGC TAAAAATGCT   300
AAAGATATGG CAGCAGGAGC GGTTTTAGTT GTTTCCTTAT TTGCCGTATT GGTGGGATTG   360
ATTATTTTTA TACCCAAGAT ACTTGCTTTA CTTTTATGA                          399