Sequences for SETVI04152

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SETVI04152 (A0A4U6V9F4)

E Setaria viridis | Tetraspanin

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Orthologs 109

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SETVI04152 reference isoform	251			5	A0A4U6V9F4

Protein Sequence

Download: Fasta

MMMMGRRSGE GGRSRQGLGW AACCLGFLLK LLAFLQAFAA VSAILYAAWI LSRWARHHHL    60
HLQDLLPGLW FPSLVMAAGL FYCILLLAGY LAAEINTGCC LCFYTIPAMA MMLLEAALAA   120
HLTINEHWIQ DLPDDRTGEL HNLLSFIHNN LDLCRWVALA IFATQALSLF LAMILRAMLS   180
ARTMDYDSDE DFVVIRRPLL VAQAPPPYLP TTVDTRGFRP DLWSSRMRQK YGLNTSDYTY   240
NTVDANAAPP Q                                                        251

cDNA Sequence

Download: Fasta

ATGATGATGA TGGGTCGCCG GAGCGGAGAA GGCGGCCGTA GCAGACAAGG CCTGGGCTGG    60
GCTGCGTGCT GCCTGGGATT CCTGCTCAAG CTGCTCGCCT TCCTCCAGGC CTTCGCCGCC   120
GTCTCCGCCA TCCTCTACGC CGCCTGGATC CTCTCCCGCT GGGCGCGTCA CCACCACCTC   180
CACCTCCAGG ACCTCCTCCC CGGCCTCTGG TTTCCATCGC TCGTCATGGC GGCGGGACTC   240
TTCTACTGCA TCCTGCTCCT CGCGGGCTAC CTGGCGGCCG AGATCAACAC CGGATGCTGC   300
CTCTGCTTCT ACACCATCCC GGCCATGGCT ATGATGCTGC TCGAAGCTGC CCTCGCCGCT   360
CATCTCACCA TCAACGAGCA CTGGATCCAG GACCTGCCCG ATGACCGCAC CGGCGAACTC   420
CACAACTTGC TCTCCTTCAT CCACAATAAC CTCGACCTAT GCAGATGGGT TGCTCTTGCC   480
ATCTTCGCCA CGCAGGCACT CTCACTGTTC TTGGCCATGA TTTTACGAGC CATGCTGTCT   540
GCCCGGACCA TGGACTACGA CAGTGATGAA GACTTTGTGG TCATAAGGAG GCCGCTCCTC   600
GTTGCCCAAG CTCCTCCGCC TTATCTTCCC ACCACAGTTG ATACCAGAGG TTTCCGTCCA   660
GACCTCTGGA GCTCAAGAAT GAGACAGAAG TATGGATTGA ACACAAGTGA CTACACCTAC   720
AACACAGTGG ATGCAAATGC AGCACCGCCT CAGTGA                             756