Sequences for SCOMX19479

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SCOMX19479 (A0A8D2ZLS7)

E Scophthalmus maximus | RING-type E3 ubiquitin transferase [si:ch211-81a5.1]

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Orthologs 229

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 201
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SCOMX19479 reference isoform	293			9	A0A8D2ZLS7

Protein Sequence

Download: Fasta

MAEAPQHRFF CHCCKCETSP KLPDLVCPRC DSDFIEEVTE DSSLLQERTS TASEDSNSLF    60
SELWQLLFME RSALLSHPPS SGSHPDDGEQ VSAGQSRPSP ESPADAEARE PESPSQPDQE   120
RSPRPEQRPA VEGIVQQFLA DLFVNNGNPG AAPAALSSML QLHSNPGDYA WGQGGLDAVI   180
TELLGQLEST GPPPAEEEMI SSLPTVCISQ EQIDCRLECP VCREEYSFGE PVRKLPCLHY   240
FHSHCIVPWL ELHDTCPVCR KSLDGVDNSL APTSAPPGDL PIRIEQQQER QAS          293

cDNA Sequence

Download: Fasta

ATGGCGGAGG CTCCACAACA CCGGTTTTTC TGTCACTGCT GTAAATGTGA AACAAGCCCT    60
AAGCTCCCGG ATCTTGTCTG TCCCAGATGT GACTCTGACT TCATTGAGGA GGTGACAGAA   120
GACTCCAGTC TCCTGCAGGA GCGCACCTCC ACGGCCAGCG AAGACTCCAA CTCGTTGTTC   180
TCGGAGTTAT GGCAGCTGCT GTTTATGGAG CGCTCTGCTC TGCTGTCGCA TCCGCCCTCC   240
TCAGGGTCCC ACCCGGACGA CGGCGAGCAG GTATCTGCAG GTCAGAGCCG TCCCTCTCCG   300
GAGTCACCGG CCGACGCCGA GGCCAGAGAA CCAGAGTCTC CTTCGCAGCC TGACCAAGAG   360
AGGTCACCCA GGCCAGAGCA GAGGCCTGCA GTGGAAGGGA TCGTGCAGCA GTTCCTGGCC   420
GACCTCTTTG TCAACAACGG AAATCCCGGT GCCGCACCAG CTGCATTATC CAGCATGCTG   480
CAGCTGCACT CGAACCCAGG AGACTATGCG TGGGGTCAGG GAGGCCTGGA TGCTGTCATC   540
ACCGAGTTGT TAGGACAGCT CGAGAGCACA GGTCCGCCCC CTGCAGAAGA GGAGATGATC   600
TCATCCCTGC CAACAGTTTG CATCTCTCAG GAACAGATAG ACTGCAGACT GGAGTGTCCA   660
GTGTGCAGGG AGGAGTATTC ATTCGGGGAA CCTGTCAGGA AGCTGCCCTG CCTCCATTAC   720
TTCCACAGTC ATTGTATAGT GCCTTGGCTG GAGCTGCATG ATACCTGCCC CGTGTGCCGC   780
AAAAGCCTCG ACGGTGTCGA CAACAGCCTC GCACCCACGT CAGCCCCCCC GGGCGATCTC   840
CCCATCAGGA TAGAGCAACA ACAAGAGAGG CAGGCGAGCT GA                      882