Sequences for SCOMX19302

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SCOMX19302 (A0A2U9CXD3)

E Scophthalmus maximus | Putative sodium channel subunit beta-1-like [scn1bb]

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Orthologs 147

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 44
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SCOMX19302 reference isoform	221			5	A0A2U9CXD3

Protein Sequence

Download: Fasta

MAASHLLLPA LLCTLFVHQC HGACAEVDSD TQAVAGKNFK LGCISCKRRS EVDGSATIDW    60
YFRPKGEADF VHIYTYNEDG PTIASDQFLD RLDWIGSKAS NDIQDGSIHL LNVTFNDTGT   120
YRCFFNRILF YEYYEYSTVV SKVVHLSVVA KASRGTASIV SEVMMYVSII GLQVWLLIEM   180
IYCYRKISAA GEEALREAAN AEYLAIASES KDNCAGVQVG E                       221

cDNA Sequence

Download: Fasta

ATGGCTGCAT CACACCTGCT GCTCCCCGCC CTGCTCTGCA CGCTGTTCGT GCACCAGTGT    60
CACGGGGCCT GTGCCGAGGT GGACTCCGAC ACGCAGGCGG TGGCGGGCAA GAACTTCAAA   120
CTGGGCTGCA TCTCCTGCAA GAGGAGGAGC GAGGTGGACG GCTCCGCCAC CATCGACTGG   180
TACTTCAGGC CCAAAGGAGA AGCCGACTTT GTCCACATCT ACACCTACAA CGAGGATGGC   240
CCCACCATCG CGAGCGACCA ATTTCTGGAC CGCCTGGATT GGATCGGGAG CAAGGCGAGC   300
AACGACATCC AAGATGGCTC CATACACCTG CTCAACGTCA CCTTCAACGA CACGGGCACC   360
TACCGCTGCT TCTTCAACCG CATCCTCTTC TACGAGTACT ACGAGTACAG CACCGTCGTC   420
AGCAAGGTGG TACACCTCAG TGTGGTGGCC AAAGCCAGCA GAGGAACCGC CTCCATCGTG   480
TCAGAGGTCA TGATGTACGT GTCCATCATC GGCCTGCAGG TCTGGCTCCT CATAGAGATG   540
ATCTACTGCT ACAGGAAGAT ATCGGCGGCC GGGGAAGAAG CGCTACGAGA AGCAGCAAAT   600
GCTGAGTATT TAGCGATCGC CTCTGAAAGT AAAGACAACT GTGCAGGGGT GCAGGTCGGA   660
GAATAG                                                              666