Sequences for SCOMX03852

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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SCOMX03852 (ENSSMAG00000020892.1)

E Scophthalmus maximus

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Orthologs 218

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SCOMX03852 reference isoform	275			7	ENSSMAG00000020892.1

Protein Sequence

Download: Fasta

MGGVYSGERM AGVFSYESSE IDWCEDNYRH SEHVAEYFNT MSSFFFFIIS PVMLYLLHPY    60
AKERSLAIHI VWIMMIFVGL FSAYFHMTLS FVGQMLDELS ILWVLAVGYA TWFPRKMFPA   120
FIKDRSTFSR LVLVVTVITT LSSFVRPTAN AYALNCFGLH LLYTLAVEMR CCTDQKALRL   180
AKMSVTLWVL AISCWISDRV GCSFWQQLNF CYLHGIWHIL IVIAVAYGST LIAYLDANYE   240
IPYSLPGLQY WPCDKWAVGL PHIVLKGTTK TSKRC                              275

cDNA Sequence

Download: Fasta

ATGGGGGGCG TCTACTCCGG TGAAAGGATG GCAGGAGTTT TCTCCTACGA GAGTTCAGAA    60
ATCGACTGGT GTGAAGACAA CTACAGACAC TCCGAACATG TGGCGGAGTA CTTCAACACT   120
ATGAGCAGCT TTTTCTTCTT CATTATATCT CCGGTGATGC TCTACCTTCT GCATCCTTAC   180
GCCAAAGAGA GGAGCCTGGC AATCCACATT GTTTGGATCA TGATGATTTT TGTAGGGCTC   240
TTCTCAGCCT ACTTCCACAT GACCCTTAGT TTCGTTGGCC AGATGTTGGA TGAGCTGTCA   300
ATCCTGTGGG TGTTGGCGGT GGGATACGCC ACCTGGTTCC CCCGCAAGAT GTTTCCTGCT   360
TTTATTAAAG ACAGGTCCAC ATTTTCAAGG CTCGTCCTGG TGGTTACTGT CATCACCACC   420
TTGTCATCAT TCGTCAGGCC TACAGCCAAT GCCTACGCTT TAAACTGCTT CGGCCTCCAC   480
CTGCTGTACA CTCTGGCAGT CGAAATGAGA TGCTGCACTG ACCAAAAGGC TCTACGACTG   540
GCCAAGATGT CAGTGACTCT GTGGGTGCTC GCCATCTCCT GCTGGATCAG TGACCGTGTG   600
GGCTGCAGCT TCTGGCAGCA GCTAAACTTC TGCTACCTGC ACGGTATCTG GCACATTCTC   660
ATTGTGATAG CGGTGGCTTA CGGCAGCACC CTGATAGCTT ACCTGGACGC CAACTATGAG   720
ATACCGTACT CACTGCCTGG ACTGCAGTAC TGGCCATGTG ACAAATGGGC TGTTGGATTA   780
CCTCACATTG TCCTGAAAGG CACGACCAAA ACAAGCAAGC GGTGCTAA                828