Sequences for SARHA00311

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SARHA00311 (ENSSHAG00000001618)

E Sarcophilus harrisii

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Orthologs 1369

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 122
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SARHA00311 reference isoform	190			6	ENSSHAG00000001618

Protein Sequence

Download: Fasta

RVTMAESQQG LEGLTEEAAL SFCSDPDPST KDFLLQQTML RIKDPKRSLD FYTRVLGMTL    60
LQKYDFPTMK FSLYFLAFED KNDIPKDKSE RTAWTFSRKG TLELTHNWGT ENDEKQAYHN   120
GNSDPRGFGP TGHIGIAVPD VQSACKRFEE LGVKFVKKPD EGKMKGLAFI QDPDGYWIEI   180
LNPAHMITLT                                                          190

cDNA Sequence

Download: Fasta

CGTGTCACTA TGGCCGAGTC TCAGCAGGGA TTAGAAGGCC TTACCGAAGA GGCCGCCCTG    60
AGTTTCTGCT CGGACCCAGA CCCCAGTACC AAGGACTTCC TGTTGCAACA AACAATGTTA   120
AGAATAAAGG ATCCAAAAAG GTCACTGGAT TTCTACACAA GAGTTCTTGG AATGACACTA   180
CTCCAAAAGT ATGATTTTCC TACTATGAAG TTTTCACTCT ACTTTTTGGC TTTTGAGGAC   240
AAAAATGACA TCCCAAAAGA TAAAAGTGAA AGAACAGCTT GGACATTTTC CAGGAAAGGT   300
ACACTTGAGT TAACACACAA CTGGGGCACT GAAAATGACG AAAAACAGGC TTATCATAAT   360
GGCAATTCAG ACCCTCGGGG ATTTGGTCCC ACAGGCCACA TAGGAATTGC TGTTCCTGAT   420
GTACAGAGTG CTTGTAAAAG ATTTGAGGAA TTAGGAGTAA AATTTGTGAA GAAACCTGAT   480
GAAGGCAAAA TGAAAGGACT GGCATTTATT CAAGATCCTG ATGGCTACTG GATTGAAATT   540
CTGAATCCTG CTCATATGAT AACCCTCACT TAG                                573