Sequences for SAIBB03873

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SAIBB03873 (A0A2K6TDW4)

E Saimiri boliviensis boliviensis | EGF-like domain-containing protein

‹

Orthologs 80

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	SAIBB03874	193			5	A0A2K6TDY8
	SAIBB03875	151			4	A0A2K6TDZ0
	SAIBB03873 reference isoform	230			6	A0A2K6TDW4

Protein Sequence

Download: Fasta

MTWRHHVRLL FMISLALRII NLGNSYQIEK HNGSRGEVTK VAALKHQQTP LNWTSGHVGE    60
VTGSEEGWRP GERLPFSRAF QEGAPGRPRC CRNGGTCVLG SFCVCPAHFT GRYCEHDQRR   120
SECGSLGHGA WTLRGCYLCR CVFGALHCLS LQSPGHCDAK DFLASRAHGP SAGGAPSLLL   180
LLPCALLHRL LRRDAPARPP PPLVPSVPQR EPRPCRRGPG FGHRLSFSML              230

cDNA Sequence

Download: Fasta

ATGACCTGGA GGCATCATGT CAGGCTTCTG TTTATGATCA GTTTGGCATT ACGGATCATC    60
AACTTGGGAA ACAGCTATCA AATAGAGAAA CATAACGGCA GTAGAGGGGA AGTCACCAAG   120
GTTGCGGCTC TGAAGCACCA ACAGACACCG CTCAACTGGA CCTCGGGTCA TGTCGGGGAG   180
GTGACTGGGA GCGAGGAGGG CTGGAGGCCT GGGGAGCGGC TCCCCTTCTC CCGAGCTTTC   240
CAAGAGGGTG CGCCCGGGAG GCCACGCTGC TGCCGCAACG GCGGCACCTG CGTGCTGGGC   300
AGCTTCTGCG TGTGCCCGGC CCACTTCACC GGCCGCTACT GCGAGCACGA CCAGAGGCGC   360
AGTGAATGCG GCTCCCTGGG ACACGGAGCC TGGACCCTCC GCGGCTGCTA CCTCTGCAGG   420
TGCGTCTTCG GGGCCCTGCA CTGCCTCTCC CTCCAGTCGC CTGGCCACTG TGACGCGAAA   480
GACTTCCTGG CCTCCCGCGC TCACGGGCCG AGCGCCGGGG GCGCGCCCAG CCTGCTGCTC   540
TTGCTGCCCT GCGCGCTTCT GCACCGCCTC CTGCGCCGGG ATGCGCCAGC GCGCCCTCCT   600
CCGCCGCTTG TCCCTTCCGT GCCCCAGCGG GAGCCACGCC CCTGCAGAAG AGGGCCGGGA   660
TTTGGGCATC GCCTTTCATT TTCTATGTTG TAA                                693