Sequences for RHIRO20276

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RHIRO20276 (A0A2K6NRG9)

E Rhinopithecus roxellana | Transmembrane emp24 domain-containing protein 1 [TMED1]

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Orthologs 787

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1179
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RHIRO20277	74			2	A0A2K6NRH9
	RHIRO20276 reference isoform	227			4	A0A2K6NRG9

Protein Sequence

Download: Fasta

MMAAGAALAL ALWLLMPPVG VGGAGPPPIQ DGEFTFLLPA GRKQCFYQSA PANASLETEY    60
QVIGGAGLDV DFTLESPQGV LLVSESRKAD GVHTVEPTEA GDYKLCFDNS FSTISEKLVF   120
FELIFDSLQD DEEVEGWAEA VEPEEMLDVK MEDIKESIET MRTRLERSIQ MLTLLRAFEA   180
RDRNLQEGNL ERVNFWSAVN VAVLLLVAVL QVCTLKRFFQ DKRPVPT                 227

cDNA Sequence

Download: Fasta

ATGATGGCGG CCGGCGCGGC CCTAGCCCTG GCCTTGTGGC TACTAATGCC ACCCGTGGGG    60
GTGGGAGGGG CGGGGCCTCC GCCAATCCAG GACGGTGAGT TCACGTTCCT GTTGCCGGCG   120
GGGAGGAAGC AGTGTTTTTA CCAGTCCGCG CCGGCCAACG CAAGCCTGGA GACCGAATAC   180
CAGGTGATCG GAGGTGCTGG GCTGGACGTG GACTTCACGC TGGAGAGCCC TCAGGGCGTG   240
CTGTTGGTCA GCGAGTCCCG CAAGGCTGAT GGGGTACACA CCGTGGAGCC AACGGAGGCC   300
GGGGACTACA AGCTGTGCTT TGACAACTCC TTCAGCACCA TCTCCGAGAA GCTGGTGTTC   360
TTTGAATTGA TCTTTGACAG CCTCCAGGAT GACGAGGAGG TCGAGGGATG GGCAGAGGCC   420
GTGGAGCCCG AGGAGATGCT GGATGTTAAA ATGGAGGACA TCAAGGAGTC CATTGAGACC   480
ATGCGGACCC GGCTGGAGCG CAGCATCCAG ATGCTGACGC TACTTCGGGC CTTCGAGGCA   540
CGTGACCGCA ACCTGCAAGA GGGCAACTTG GAGCGGGTCA ACTTCTGGTC AGCTGTCAAC   600
GTGGCGGTGC TGCTGCTGGT GGCCGTGCTG CAGGTCTGCA CGCTCAAGCG CTTCTTCCAG   660
GACAAGCGCC CGGTGCCCAC GTAG                                          684