Sequences for RHIFE25646

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RHIFE25646 (A0A671FAP8)

E Rhinolophus ferrumequinum | Chromatin target of PRMT1 [CHTOP]

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Orthologs 226

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 19
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RHIFE25647	202			4	A0A671FB87
	RHIFE25648	76			3	A0A671FBA5
	RHIFE25646 reference isoform	249			5	A0A671FAP8

Protein Sequence

Download: Fasta

MAAPSAPKVV LKSTTKMSLN ERFTNMLKNK QPMPVNIRAS MQQQQQLASA RNRRLAQQME    60
NRPSVQAALK LKQKSLKQRL GKSNIQARLG RPIGALARGA IGGRGLPIIQ RGLPRGGLRG   120
GRATRTLLRG GMSLRGQNLL RGGRAVAPRM GLRRGGVRGR GGPGRGGLGR GAMGRGGIGG   180
RGRGMIGRGR GGFGGRGRGR GRGRGGLARP VLTKEQLDNQ LDAYMSKTKG HLDAELDAYM   240
AQTDPEAND                                                           249

cDNA Sequence

Download: Fasta

ATGGCTGCAC CGTCAGCGCC GAAAGTTGTG CTAAAAAGCA CCACCAAGAT GTCTCTAAAT    60
GAGCGCTTTA CTAATATGCT GAAGAACAAA CAGCCGATGC CAGTGAATAT TCGGGCTTCG   120
ATGCAGCAAC AGCAGCAGCT AGCCAGTGCC AGAAACAGAA GACTGGCCCA GCAGATGGAG   180
AATAGACCCT CTGTCCAGGC AGCATTAAAA CTTAAGCAGA AGAGCTTAAA GCAACGCCTG   240
GGTAAGAGTA ACATCCAGGC ACGGTTAGGC CGGCCCATAG GGGCCCTGGC CAGGGGAGCG   300
ATCGGAGGAC GAGGCCTGCC CATAATCCAG AGAGGCTTGC CCAGAGGAGG ACTCCGTGGG   360
GGACGTGCCA CGAGAACCCT GCTGAGGGGC GGGATGTCGC TCCGAGGTCA AAACCTGCTC   420
CGAGGTGGAC GAGCCGTAGC TCCCCGAATG GGCTTAAGAA GAGGTGGTGT CCGAGGTCGT   480
GGAGGTCCTG GGAGAGGGGG CCTAGGGCGT GGAGCTATGG GTCGTGGAGG AATCGGTGGT   540
AGAGGTCGGG GTATGATAGG TCGGGGAAGA GGGGGCTTTG GAGGACGTGG ACGTGGACGT   600
GGACGAGGGA GAGGTGGCCT TGCCCGCCCT GTACTGACGA AGGAGCAGCT GGACAACCAG   660
TTGGATGCAT ACATGTCGAA AACGAAAGGA CACCTGGATG CCGAGTTGGA CGCCTACATG   720
GCACAGACAG ATCCTGAAGC CAATGATTGA                                    750