Sequences for RHIBE10053

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RHIBE10053 (A0A2K6M5H1)

E Rhinopithecus bieti | Pancreas/duodenum homeobox protein 1 [PDX1]

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Orthologs 162

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RHIBE10053 reference isoform	284			2	A0A2K6M5H1

Protein Sequence

Download: Fasta

MNGEEQYYAA TQLYKDPCAF QRGPAPEFSA SPPACLYVGR QAPPPPPPPQ FPGALGALEQ    60
GSPPDISPYE VPPLADDPAV AHLHHHLPAQ LALPHPPSGP FPEGAEPGVL EEPNRVQLPF   120
PWMKSTKAHA WKGQWAGGAY AAEPEENKRT RTAYTRAQLL ELEKEFLFNK YISRPRRVEL   180
AVMLNLTERH IKIWFQNRRM KWKKEEDKKR GGGTAVGGGG VAEPEQDCAV TSGEELLALP   240
PPPPPGGAVP PAAPVAAREG RLPPGLSASP QPSSVAPRRP QEPR                    284

cDNA Sequence

Download: Fasta

ATGAACGGCG AGGAGCAGTA CTACGCGGCC ACGCAGCTTT ACAAGGACCC ATGCGCATTC    60
CAGCGAGGCC CTGCGCCGGA GTTCAGCGCC AGCCCCCCTG CGTGCCTGTA CGTGGGCCGC   120
CAGGCCCCGC CGCCGCCGCC GCCACCCCAG TTCCCCGGCG CCCTGGGCGC GCTGGAGCAG   180
GGCAGCCCCC CGGACATCTC CCCATACGAG GTGCCCCCGC TCGCCGACGA CCCCGCGGTG   240
GCGCACCTCC ACCACCACCT CCCGGCTCAG CTCGCGCTCC CCCATCCGCC CTCCGGGCCC   300
TTCCCGGAGG GAGCCGAGCC GGGCGTCCTG GAGGAACCCA ACCGCGTCCA GCTACCTTTC   360
CCATGGATGA AGTCTACCAA AGCTCATGCG TGGAAAGGCC AGTGGGCAGG CGGCGCCTAC   420
GCGGCGGAGC CGGAGGAGAA CAAGCGGACG CGCACGGCCT ACACGCGCGC ACAGCTGCTA   480
GAGCTGGAGA AGGAGTTCCT ATTCAACAAG TACATCTCAC GGCCGCGCCG GGTGGAGCTG   540
GCTGTGATGT TGAACTTGAC CGAGAGACAC ATCAAGATCT GGTTCCAAAA CCGCCGCATG   600
AAGTGGAAAA AGGAGGAGGA CAAGAAGCGC GGCGGCGGGA CAGCGGTCGG GGGTGGCGGG   660
GTCGCGGAGC CTGAGCAGGA CTGCGCCGTG ACCTCCGGCG AGGAGCTTCT GGCGCTGCCG   720
CCGCCGCCGC CCCCCGGAGG TGCTGTGCCG CCCGCTGCCC CAGTTGCCGC CCGAGAGGGC   780
CGCCTGCCAC CTGGCCTTAG CGCGTCGCCA CAGCCCTCCA GCGTCGCGCC TCGGCGGCCA   840
CAGGAACCAC GGTGA                                                    855