Sequences for RATNO40356

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO40356 (T2AG_RAT)

E Rattus norvegicus | Transcription initiation factor IIA subunit 2 [Gtf2a2]

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Orthologs 796

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 53
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO40357	68			3	A0A8I5ZJD1
	RATNO40358	106			4	A0A0G2K1B8
	RATNO40356 reference isoform	109			4	T2AG_RAT

Protein Sequence

Download: Fasta

MAYQLYRNTT LGNSLQESLD ELIQSQQITP QLALQVLLQF DKAINSALAQ RVRNRVNFRG    60
SLNTYRFCDN VWTFVLNDVE FREVTELIKV DKVKIVACDG KNTGSNTTE               109

cDNA Sequence

Download: Fasta

ATGGCATATC AGTTATACAG AAATACAACT TTGGGGAACA GTCTTCAAGA GAGCCTTGAT    60
GAGCTCATAC AGTCTCAACA GATCACCCCC CAGCTTGCCC TTCAAGTTCT ACTTCAGTTT   120
GATAAAGCTA TAAATTCAGC ATTGGCTCAG AGAGTCAGGA ACAGAGTCAA TTTCAGGGGC   180
TCTCTAAATA CATACAGATT CTGCGATAAT GTTTGGACTT TTGTATTGAA TGATGTTGAA   240
TTCAGAGAGG TGACAGAACT TATTAAAGTG GATAAAGTGA AAATTGTAGC CTGTGATGGT   300
AAAAATACCG GTTCCAATAC CACGGAATGA                                    330