Gene RATNO38551 (F1LRM7)

E Rattus norvegicus | Collagen type II alpha 1 chain [Col2a1]

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Protein sequences and cDNA of the selected isoforms are displayed below the tables
Protein ID
Sequence length
Exons
Domain Architectures
Number exons
Cross reference
RATNO38552 reference isoform 1487 54 UniProtKB/TrEMBL A0A8I6AM44
RATNO38551 1419 53 UniProtKB/TrEMBL F1LRM7


Protein Sequence

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MIRLGAPQSL VLLTLLIATV LQCQGQDAQE AGSCLQNGQR YKDKDVWKPS SCRICVCDTG    60
NVLCDDIICE DPDCLNPEIP FGECCPICPA DLATASGKLG PKGQKGEPGD IKDIIGPKGP   120
PGPQGPAGEQ GPRGDRGDKG ERGAPGPRGR DGEPGTPGNP GPPGPPGPPG PPGLGGGNFA   180
AQMAGGFDEK AGGAQMGVMQ GPMGPMGPRG PPGPAGAPGP QGFQGNPGEP GEPGVSGPMG   240
PRGPPGPAGK PGDDGEAGKP GKAGERGLPG PQGARGFPGT PGLPGVKGHR GYPGLDGAKG   300
EAGAPGVKGE SGSPGENGSP GPMGPRGLPG ERGRTGPAGA AGARGNDGQP GPAGPPGPVG   360
PAGGPGFPGA PGAKGEAGPT GARGPEGAQG SRGEPGNPGS PGPAGASGNP GTDGIPGAKG   420
SAGAPGIAGA PGFPGPRGPP GPQGATGPLG PKGQTGEPGI AGFKGEQGPK GETGPAGPQG   480
APGPAGEEGK RGARGEPGGA GPIGPPGERG APGNRGFPGQ DGLAGPKGAP GERGPSGLAG   540
PKGANGDPGR PGEPGLPGAR GLTGRPGDAG PQGKVGPSGA PGEDGRPGPP GPQGARGQPG   600
VMGFPGPKGA NGEPGKAGEK GLAGAPGLRG LPGKDGETGA AGPPGPSGPA GERGEQGAPG   660
PSGFQGLPGP PGPPGEGGKQ GDQGIPGEAG APGLVGPRGE RGFPGERGSP GAQGLQGPRG   720
LPGTPGTDGP KGAAGPDGPP GAQGPPGLQG MPGERGAAGI AGPKGDRGDV GEKGPEGAPG   780
KDGGRGLTGP IGPPGPAGAN GEKGEVGPPG PSGSTGARGA PGERGETGPP GPAGFAGPPG   840
ADGQPGAKGD QGEAGQKGDA GAPGPQGPSG APGPQGPTGV TGPKGARGAQ GPPGATGFPG   900
AAGRVGPPGS NGNPGPAGPP GPAGKDGPKG ARGDTGAPGR AGDPGLQGPA GAPGEKGEPG   960
DDGPSGSDGP PGPQGLAGQR GIVGLPGQRG ERGFPGLPGP SGEPGKQGAP GASGDRGPPG  1020
PVGPPGLTGP AGEPGREGSP GADGPPGRDG AAGVKGDRGE TGALGAPGAP GPPGSPGPAG  1080
PTGKQGDRGE AGAQGPMGPS GPAGARGIAG PQGPRGDKGE AGEPGERGLK GHRGFTGLQG  1140
LPGPPGPSGD QGTSGPAGPS GPRGPPGPVG PSGKDGSNGI PGPIGPPGPR GRSGETGPAG  1200
PPGNPGPPGP PGPPGPGIDM SAFAGLGQRE KGPDPLQYMR ADEADSTLRQ HDVEVDATLK  1260
SLNNQIESIR SPDGSRKNPA RTCQDLKLCH PEWKSGDYWI DPNQGCTLDA MKVFCNMETG  1320
ETCVYPNPAT VPRKNWWSSK SKEKKHIWFG ETMNGGFHFS YGDGNLAPNT ANVQMTFLRL  1380
LSTEGSQNIT YHCKNSIAYL DEAAGNLKKA LLIQGSNDVE MRAEGNSRFT YTALKDGCTK  1440
HTGKWGKTII EYRSQKTSRL PIVDIAPMDI GGPDQEFGVD IGPVCFL                1487

cDNA Sequence

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ATGATCCGCC TCGGGGCTCC CCAGTCGCTG GTGCTGCTGA CGCTGCTCAT CGCCACGGTC    60
CTACAATGTC AGGGCCAGGA TGCCCAGGAG GCTGGCAGCT GTCTGCAGAA TGGGCAGAGG   120
TATAAAGATA AGGATGTATG GAAGCCCTCG TCCTGCCGCA TCTGTGTGTG TGACACTGGG   180
AATGTCCTCT GCGATGACAT AATCTGTGAA GACCCAGACT GCCTCAACCC CGAGATCCCC   240
TTCGGAGAGT GCTGTCCCAT CTGCCCAGCT GACCTCGCCA CTGCCAGTGG AAAATTAGGG   300
CCAAAGGGGC AGAAAGGAGA ACCTGGAGAT ATCAAAGATA TCATAGGACC TAAAGGACCT   360
CCTGGCCCTC AGGGACCTGC CGGTGAACAA GGACCCAGAG GTGACCGTGG TGACAAGGGA   420
GAGAGGGGTG CACCTGGACC CCGTGGCAGA GATGGAGAAC CTGGTACCCC TGGAAATCCT   480
GGTCCCCCTG GCCCTCCAGG CCCCCCTGGT CCCCCTGGCC TTGGTGGAGG AAACTTTGCA   540
GCCCAGATGG CTGGAGGATT TGACGAGAAG GCTGGTGGTG CCCAGATGGG AGTCATGCAA   600
GGCCCCATGG GCCCCATGGG ACCTCGTGGA CCCCCAGGCC CCGCCGGTGC CCCCGGCCCT   660
CAAGGATTTC AAGGCAATCC TGGTGAACCT GGCGAGCCTG GTGTCTCTGG TCCCATGGGT   720
CCCCGAGGTC CTCCAGGTCC TGCTGGAAAA CCTGGTGATG ATGGTGAAGC TGGAAAGCCC   780
GGAAAGGCCG GAGAAAGAGG CCTCCCTGGT CCTCAGGGTG CTCGTGGATT CCCGGGAACC   840
CCCGGTCTTC CTGGTGTCAA GGGTCACAGA GGTTACCCAG GCCTCGATGG TGCTAAGGGA   900
GAAGCTGGTG CTCCAGGTGT GAAGGGTGAG AGCGGTTCCC CTGGTGAGAA CGGATCCCCA   960
GGCCCAATGG GTCCCCGTGG CCTGCCTGGC GAGAGAGGAC GGACTGGCCC TGCTGGTGCT  1020
GCTGGTGCTC GAGGCAACGA CGGCCAGCCA GGCCCTGCTG GACCTCCGGG TCCTGTTGGT  1080
CCTGCAGGTG GTCCTGGCTT CCCTGGTGCT CCTGGTGCCA AGGGCGAAGC TGGTCCCACT  1140
GGTGCCCGTG GTCCTGAAGG TGCTCAAGGT TCTCGTGGCG AACCCGGCAA TCCCGGATCC  1200
CCCGGGCCCG CAGGCGCTTC TGGTAACCCA GGGACTGATG GTATTCCCGG AGCCAAAGGA  1260
TCTGCTGGCG CTCCTGGAAT TGCTGGTGCC CCTGGCTTCC CTGGGCCCCG TGGCCCTCCC  1320
GGTCCTCAAG GTGCAACTGG TCCTCTGGGC CCCAAAGGTC AGACGGGTGA GCCCGGCATC  1380
GCTGGCTTCA AAGGTGAACA AGGCCCCAAG GGAGAGACTG GACCTGCTGG GCCCCAGGGA  1440
GCCCCTGGCC CTGCTGGTGA AGAAGGAAAA CGAGGTGCTC GAGGAGAGCC CGGTGGCGCT  1500
GGACCTATCG GCCCCCCTGG AGAGAGAGGT GCTCCTGGCA ACCGTGGTTT CCCAGGTCAA  1560
GATGGTCTGG CAGGTCCCAA GGGTGCCCCT GGAGAGCGAG GGCCTAGTGG CCTGGCTGGT  1620
CCTAAGGGTG CCAATGGTGA CCCGGGTCGT CCTGGAGAAC CTGGTCTTCC TGGAGCCAGG  1680
GGTCTTACTG GCCGCCCTGG TGATGCTGGT CCTCAAGGCA AAGTTGGTCC TTCTGGAGCC  1740
CCTGGAGAAG ACGGTCGCCC TGGTCCTCCT GGTCCTCAGG GAGCTCGTGG GCAGCCTGGC  1800
GTCATGGGTT TCCCTGGCCC CAAAGGAGCC AATGGCGAGC CTGGCAAAGC TGGTGAGAAA  1860
GGACTGGCTG GTGCTCCTGG TCTGAGAGGT CTTCCTGGCA AAGATGGTGA GACAGGAGCC  1920
GCAGGACCCC CCGGCCCCAG CGGACCTGCT GGTGAACGAG GCGAGCAGGG TGCTCCTGGG  1980
CCATCAGGGT TCCAGGGACT TCCTGGCCCT CCTGGTCCCC CGGGTGAAGG TGGAAAGCAA  2040
GGTGACCAGG GTATTCCTGG TGAAGCTGGA GCCCCTGGCC TCGTTGGTCC CCGGGGTGAA  2100
CGAGGTTTCC CAGGTGAACG TGGCTCTCCC GGTGCTCAGG GCCTCCAGGG TCCCCGAGGC  2160
CTCCCTGGCA CTCCTGGTAC TGATGGTCCC AAAGGTGCGG CTGGCCCAGA TGGTCCCCCT  2220
GGGGCTCAGG GCCCTCCAGG TCTACAGGGA ATGCCTGGTG AGAGGGGAGC AGCTGGTATT  2280
GCTGGACCCA AGGGAGACAG AGGTGATGTT GGCGAGAAAG GCCCAGAGGG AGCTCCTGGA  2340
AAAGATGGTG GCCGAGGTCT TACTGGGCCC ATCGGGCCCC CAGGACCAGC AGGTGCCAAT  2400
GGCGAGAAGG GAGAAGTCGG ACCTCCTGGT CCTTCAGGAA GTACTGGAGC TCGAGGCGCC  2460
CCGGGTGAGC GCGGAGAGAC TGGGCCACCT GGACCTGCTG GATTCGCTGG CCCTCCTGGT  2520
GCTGATGGCC AGCCTGGTGC CAAGGGCGAT CAAGGAGAAG CTGGACAGAA AGGTGACGCT  2580
GGTGCCCCTG GCCCACAAGG CCCCTCAGGA GCTCCCGGGC CACAGGGTCC TACTGGAGTG  2640
ACTGGTCCTA AGGGAGCCCG GGGCGCCCAA GGCCCACCGG GAGCCACCGG ATTCCCTGGA  2700
GCTGCTGGCC GAGTTGGACC CCCAGGTTCT AATGGCAACC CTGGGCCCGC CGGTCCCCCT  2760
GGTCCTGCTG GAAAAGATGG TCCCAAAGGT GCTCGAGGAG ACACTGGTGC CCCTGGCAGA  2820
GCTGGTGACC CTGGACTTCA AGGACCCGCA GGAGCTCCTG GAGAGAAAGG CGAACCTGGA  2880
GATGACGGTC CCTCTGGTTC TGATGGTCCC CCAGGTCCCC AGGGGCTGGC TGGTCAAAGG  2940
GGCATTGTTG GTCTGCCTGG TCAGCGTGGT GAGAGAGGAT TCCCAGGCCT TCCCGGCCCA  3000
TCGGGTGAGC CCGGCAAGCA GGGTGCACCT GGTGCATCTG GAGACAGAGG TCCTCCTGGT  3060
CCTGTGGGGC CTCCTGGCTT GACAGGACCT GCAGGTGAAC CTGGACGAGA GGGCAGCCCT  3120
GGTGCTGATG GACCCCCTGG CAGAGATGGT GCGGCTGGAG TCAAGGGTGA TCGTGGTGAG  3180
ACTGGTGCAC TTGGTGCTCC TGGAGCTCCT GGGCCCCCAG GCTCTCCTGG TCCTGCTGGC  3240
CCAACTGGCA AACAAGGAGA CAGAGGAGAG GCTGGTGCAC AAGGTCCTAT GGGCCCCTCA  3300
GGACCTGCTG GAGCCCGTGG AATTGCTGGC CCTCAAGGCC CCCGAGGTGA CAAAGGAGAA  3360
GCTGGAGAGC CTGGCGAGAG AGGACTGAAG GGGCACCGAG GTTTCACTGG ACTGCAGGGT  3420
CTGCCTGGCC CCCCGGGTCC TTCTGGAGAT CAGGGTACTT CTGGCCCTGC TGGTCCTTCC  3480
GGCCCTAGAG GTCCACCTGG CCCTGTTGGT CCCTCTGGCA AAGATGGCTC TAATGGAATC  3540
CCTGGCCCCA TCGGGCCTCC AGGTCCCCGT GGACGCTCAG GAGAAACTGG CCCTGCTGGT  3600
CCTCCTGGAA ATCCTGGTCC CCCTGGCCCT CCGGGTCCTC CTGGTCCTGG CATCGACATG  3660
TCAGCCTTTG CTGGCTTAGG ACAGAGAGAG AAGGGCCCCG ATCCCCTGCA GTACATGCGG  3720
GCCGACGAGG CAGACAGTAC CTTGAGACAG CATGACGTCG AGGTGGACGC CACGCTCAAG  3780
TCGCTGAACA ACCAGATCGA GAGCATCCGC AGCCCTGATG GCTCCCGCAA GAATCCCGCT  3840
CGCACCTGCC AGGACCTGAA ACTCTGCCAC CCAGAGTGGA AGAGCGGAGA CTACTGGATT  3900
GATCCCAACC AGGGCTGCAC CTTGGACGCC ATGAAAGTCT TCTGCAACAT GGAGACTGGC  3960
GAGACTTGCG TCTACCCCAA CCCAGCGACT GTGCCTCGGA AGAACTGGTG GAGCAGCAAG  4020
AGCAAGGAGA AGAAGCACAT CTGGTTTGGA GAGACCATGA ACGGCGGCTT CCACTTCAGC  4080
TACGGCGACG GCAACCTGGC TCCCAACACC GCTAACGTCC AGATGACTTT CCTCCGTCTA  4140
CTGTCCACTG AGGGCTCCCA GAACATCACC TACCACTGTA AGAACAGCAT TGCCTACCTG  4200
GACGAAGCAG CCGGCAACCT CAAGAAGGCC TTGCTCATCC AGGGCTCCAA TGATGTGGAG  4260
ATGAGGGCCG AGGGCAACAG CAGGTTCACG TACACTGCCC TGAAGGATGG CTGCACGAAA  4320
CACACCGGTA AGTGGGGCAA GACCATCATC GAGTACCGAT CACAGAAGAC CTCACGCCTT  4380
CCCATTGTTG ACATTGCACC CATGGACATC GGAGGGCCTG ATCAGGAATT TGGTGTGGAC  4440
ATAGGGCCTG TCTGTTTCTT GTAA                                         4464