Sequences for RATNO38537

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO38537 (D4A538)

E Rattus norvegicus | Zinc finger protein 740 [Znf740]

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Orthologs 115

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 4
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO38534	144			4	A0A8I6A2P2
	RATNO38535	205			6	A0A8I5ZWP1
	RATNO38536	143			5	A0A8I5ZQ97
	RATNO38537 reference isoform	205			6	D4A538

Protein Sequence

Download: Fasta

MAKASLLACE GLAGVSLVPT AASKKMMLSQ IASKQAENGE RAGSPDVLRC SSQMDCKPRF    60
DLSSKGHRKD SDKSRNRKDD DTLAEASHSK KTVKKVVVVE QNGSFQVKIP KNFICEHCFG   120
AFRSSYHLKR HVLIHTGEKP FECDVCDMRF IQKYHLERHK RVHSGEKPYQ CERCHQCFSR   180
TDRLLRHKRM CQGCQSKTSD GQFSL                                         205

cDNA Sequence

Download: Fasta

ATGGCCAAAG CAAGTCTTCT GGCTTGTGAA GGCCTAGCAG GTGTGAGTTT GGTTCCCACT    60
GCAGCCAGCA AGAAGATGAT GCTGAGTCAG ATTGCCAGCA AGCAGGCCGA AAATGGCGAG   120
CGGGCAGGTA GCCCCGATGT GCTGAGGTGT TCCAGTCAGA TGGACTGTAA GCCTAGATTT   180
GATTTGTCTT CAAAGGGCCA CCGAAAAGAC AGTGATAAAT CCCGCAACCG CAAAGATGAT   240
GACACCTTGG CTGAGGCCTC TCATTCAAAA AAGACTGTTA AAAAGGTGGT GGTAGTGGAA   300
CAAAATGGCT CTTTTCAAGT AAAGATCCCC AAAAATTTTA TTTGTGAACA CTGCTTTGGA   360
GCCTTTCGGA GCAGTTATCA CCTCAAGAGG CACGTCCTTA TCCACACGGG TGAGAAACCG   420
TTTGAGTGTG ACGTATGTGA TATGCGTTTC ATCCAGAAGT ACCATCTTGA ACGCCACAAG   480
CGGGTACACA GTGGCGAAAA GCCTTACCAG TGTGAACGAT GTCATCAGTG TTTTTCTCGG   540
ACAGACCGAT TACTCAGACA CAAACGGATG TGCCAAGGAT GCCAGTCCAA GACTTCTGAT   600
GGGCAGTTTT CTCTATAG                                                 618