Sequences for RATNO34231

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO34231 (A0A8I6AU59)

E Rattus norvegicus | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [Hacd4]

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Orthologs 214

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO34232	226			7	D3Z8V6
	RATNO34231 reference isoform	237			7	A0A8I6AU59

Protein Sequence

Download: Fasta

MGPSVLPAWL QPRYRKSAYL FIYYLIQFCG HSWILTNMTV RFFSFGKDSM VDTFYAIGLV    60
MRVCQSISLL ELLHIYIGIE SNQLFPKFLQ LTERIIILFG VITSQEEVQE KYVVCVLFIF   120
WNLLDMVRYT YSMLSVIGTS YAVLTWLSQT LWMPIYPLCV LAEAFTIYQS LPYFELFGKN   180
STMLPFDIST YFPYVLKLYL MMLFIAIFIR KEKTSSEDLL SNRRKCETAC CTGDKMG      237

cDNA Sequence

Download: Fasta

ATGGGGCCCT CGGTGCTGCC AGCCTGGCTG CAGCCCAGGT ATAGGAAGAG TGCGTATCTT    60
TTCATCTATT ACTTAATTCA GTTCTGTGGC CACTCATGGA TACTGACAAA CATGACAGTC   120
AGATTCTTCT CATTTGGGAA AGATTCAATG GTCGACACGT TTTACGCTAT TGGTTTGGTT   180
ATGCGGGTTT GCCAATCCAT TTCCCTCTTG GAGTTACTGC ACATCTATAT TGGCATTGAG   240
TCAAATCAGC TTTTCCCAAA GTTTTTGCAG CTTACAGAGA GAATTATCAT CCTTTTTGGG   300
GTGATCACCA GTCAAGAGGA GGTCCAAGAG AAATATGTAG TGTGTGTTTT ATTCATCTTT   360
TGGAATCTAC TGGATATGGT AAGGTACACT TACAGCATGC TGTCAGTCAT AGGGACATCT   420
TATGCTGTCT TGACATGGCT CAGTCAAACA CTATGGATGC CAATTTACCC TCTGTGTGTT   480
CTTGCTGAAG CATTCACCAT CTATCAGTCA CTGCCTTACT TTGAGTTATT TGGCAAAAAC   540
TCCACCATGC TTCCGTTTGA TATATCTACC TATTTCCCTT ACGTGCTGAA GCTATATCTC   600
ATGATGCTCT TCATAGCCAT CTTTATACGG AAAGAAAAGA CATCCTCCGA GGATCTTCTG   660
TCAAACAGAA GAAAATGTGA GACAGCCTGT TGCACAGGGG ACAAGATGGG CTGA         714