Sequences for RATNO29374

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO29374 (A0A8I6ARQ2)

E Rattus norvegicus | Maturin [Mturn]

‹

Orthologs 123

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO29373	134			3	Q5XI20
	RATNO29374 reference isoform	148			4	A0A8I6ARQ2

Protein Sequence

Download: Fasta

MDFQQLADVA EKWCSSTPFE LIAAEETERR MDFYADPGVS FYVLCPDNGC GDSFHVWSES    60
EDCLPFLQLA QDYISSCGKK TLQEVLEKVF KSFRPLLGLP DADDDAFEEY SADVEEEEPE   120
ADHPQMGVTL LRKSMTEEKR SLNVLCTF                                      148

cDNA Sequence

Download: Fasta

ATGGACTTCC AGCAGCTGGC AGATGTCGCG GAGAAGTGGT GTTCCAGCAC GCCCTTTGAG    60
CTCATCGCCG CCGAGGAGAC GGAGCGCAGG ATGGACTTCT ACGCCGACCC GGGCGTCTCC   120
TTCTACGTGC TGTGTCCGGA CAACGGCTGC GGCGACAGCT TTCACGTGTG GAGCGAGAGC   180
GAGGACTGCC TGCCCTTCTT GCAGCTGGCG CAGGACTACA TCTCTTCCTG CGGCAAGAAA   240
ACGCTCCAGG AAGTCTTGGA AAAAGTCTTC AAGTCCTTCA GACCTTTGCT GGGGCTTCCA   300
GACGCAGATG ACGACGCATT TGAAGAGTAC AGTGCAGATG TGGAGGAGGA GGAGCCAGAG   360
GCGGACCACC CCCAAATGGG GGTGACCTTG CTGAGGAAAA GCATGACGGA GGAGAAACGC   420
AGCCTGAATG TTTTATGTAC CTTTTAA                                       447