Sequences for RATNO28938

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO28938 (ENSRNOG00000031453.6)

E Rattus norvegicus

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Orthologs 157

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO28939 reference isoform	128			2	A0A8I5ZL12
	RATNO28938	85			2	ENSRNOG00000031453.6

Protein Sequence

Download: Fasta

MCACAPWDHS EITWRNLTFT LSFRTWFWRA VDLKRRLAVV PWAMASDLDF SPPEVPEPTF    60
LENLLRYGLF LGAIFQLICV LAIIVPIPKS QEAEAEPSEP RSAEVPKKPK APIPSTNKRP   120
KKETKKKR                                                            128

cDNA Sequence

Download: Fasta

ATGTGTGCAT GTGCACCGTG GGACCACTCA GAGATCACAT GGAGAAACCT GACATTCACT    60
CTTTCCTTTA GAACTTGGTT CTGGAGAGCA GTGGATCTCA AGAGACGCCT GGCAGTGGTG   120
CCTTGGGCCA TGGCCTCTGA CCTGGATTTC TCGCCTCCCG AAGTGCCTGA GCCCACCTTC   180
CTGGAGAACT TGCTGCGGTA TGGGCTCTTC CTGGGAGCCA TCTTCCAGCT CATCTGTGTC   240
CTGGCCATCA TCGTACCCAT TCCCAAGTCC CAGGAGGCGG AGGCAGAACC GTCTGAGCCC   300
AGGAGTGCAG AGGTGCCCAA GAAGCCCAAG GCTCCCATCC CTTCCACCAA CAAGAGGCCA   360
AAGAAGGAGA CCAAAAAGAA GCGGTAG                                       387