Sequences for RATNO25414

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO25414 (TSN2_RAT)

E Rattus norvegicus | Tetraspanin-2 [Tspan2]

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Orthologs 185

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO25414 reference isoform	221			8	TSN2_RAT

Protein Sequence

Download: Fasta

MGRFRGGLRC IKYLLLGFNL LFWLAGSAVI AFGLWFRFGG TIKDLSSEEK SPEYFYVGLY    60
VLVGAGALMM AVGFFGCCGA MRESQCVLGS FFTCLLVIFA AEVTTGVFAF IGKDVAIRHV   120
QSMYEEAYSD YVRDRGRGNG TLITFHSAFQ CCGKESSEQV QPTCPKELPG HKNCIDKIET   180
IISVKLQLIG IVGIGIAGLT IFGMIFSMVL CCAIRNSRDV I                       221

cDNA Sequence

Download: Fasta

ATGGGGCGTT TTCGCGGGGG CCTGCGGTGC ATCAAGTATT TGCTGCTCGG CTTCAACCTG    60
CTGTTCTGGC TAGCCGGATC GGCCGTTATT GCATTTGGAC TATGGTTTCG ATTTGGAGGT   120
ACCATAAAGG ATTTATCATC AGAGGAGAAG TCCCCAGAGT ATTTCTATGT GGGGCTGTAT   180
GTGCTGGTTG GAGCTGGAGC CCTAATGATG GCTGTGGGTT TCTTTGGGTG CTGTGGAGCC   240
ATGCGTGAGT CACAGTGTGT GCTCGGATCT TTTTTTACCT GTCTGCTGGT GATATTCGCT   300
GCTGAAGTAA CCACTGGAGT GTTTGCATTT ATAGGCAAGG ATGTAGCTAT ACGACACGTA   360
CAGAGCATGT ATGAGGAGGC CTACAGCGAT TACGTTAGGG ACAGGGGAAG GGGAAATGGA   420
ACTCTCATTA CCTTCCACTC AGCATTTCAG TGCTGTGGAA AAGAAAGCTC TGAACAAGTC   480
CAGCCCACGT GTCCAAAGGA GCTTCCAGGC CACAAGAATT GCATCGACAA AATTGAAACC   540
ATAATCAGTG TTAAGCTCCA GCTCATTGGA ATTGTTGGTA TTGGGATTGC GGGTCTCACG   600
ATCTTTGGCA TGATATTCAG CATGGTGCTC TGCTGTGCAA TACGGAACTC ACGCGATGTG   660
ATTTGA                                                              666